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[188116_at]

Description F57H12.3 /REP_DB=WormBase Gene ID /WP=CE17124 /GEN=ora-1 /TR=O45098 /GB=AAC02599.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 94      4grp_high_8_8 > 55      6grp_highest_nonorm > 88      6grp_total > 85      4grp_total > 48      6grp_highest_sub > In      6grp_cgc > 77      6grp_high1_sub > In      6grp_cgc_sub > 04_05_06      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1313
1 2 3 4 range
A 68.8
(-3)
P 		987
(1.3)
P 		1364
(3)
P 		97.7
(-2.9)
A 		1295
B 67.5
(-2.9)
P 		958
(1.3)
P 		1315
(3)
P 		50.8
(-3)
A 		1264
C 93.6
(-3)
P 		977.5
(1.7)
P 		1228.5
(3)
P 		143.9
(-2.7)
P 		1135
avr 76.6
(-3) 		974.2
(1.4) 		1302.5
(3) 		97.5
(-2.9) 		1226

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1486
1 2 3 4 5 6 range
A 455.9
(-3)
P 		1344.3
(0.9)
P 		985.9
(-0.7)
P 		1762
(2.8)
P 		1406.1
(1.2)
P 		1815.4
(3)
P 		1360
B 329.8
(-3)
P 		1171
(0.8)
P 		954.3
(-0.2)
P 		1399
(1.8)
P 		1486.5
(2.2)
P 		1659.6
(3)
P 		1330
C 424.9
(-3)
P 		1224.3
(0.7)
P 		1411.7
(1.5)
P 		1483.9
(1.9)
P 		1718.2
(2.9)
P 		1733.7
(3)
P 		1309
avr 403.5
(-3) 		1246.5
(0.8) 		1117.3
(0.2) 		1548.3
(2.2) 		1536.9
(2.1) 		1736.2
(3) 		1333
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 417
1 2 3 4 range
A 25
(-2.8)
P 		214.2
(0.5)
P 		356.6
(3)
P 		14.3
(-3)
A 		342
B 21.5
(-2.8)
P 		236.6
(1.6)
P 		304.7
(3)
P 		10.8
(-3)
A 		294
C 31
(-2.9)
P 		281.1
(0.8)
P 		428.2
(3)
P 		24.3
(-3)
P 		404
avr 25.8
(-2.8) 		244
(0.9) 		363.2
(3) 		16.5
(-3) 		347

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 535
1 2 3 4 5 6 range
A 84
(-3)
P 		478.1
(3)
P 		214.7
(-1)
P 		446.9
(2.5)
P 		424.3
(2.2)
P 		442
(2.5)
P 		394
B 114.8
(-3)
P 		389.8
(0.3)
P 		231.7
(-1.6)
P 		370.6
(0)
P 		604
(2.8)
P 		618.8
(3)
P 		504
C 157.5
(-3)
P 		373.6
(0.1)
P 		359.3
(-0.1)
P 		298.4
(-1)
P 		556
(2.7)
P 		580.4
(3)
P 		423
avr 118.8
(-3) 		413.8
(1.1) 		268.6
(-0.9) 		372
(0.5) 		528.1
(2.7) 		547.1
(3) 		428
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188116_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9399
Sequence Type Exemplar sequence
Representative Public ID F57H12.3 NCBI
Target Description F57H12.3 /REP_DB=WormBase Gene ID /WP=CE17124 /GEN=ora-1 /TR=O45098 /GB=AAC02599.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068933(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068933 NCBI Caenorhabditis elegans Onchocerca Related Antigen family member (ora-1) (ora-1) mRNA, complete cds. 11/11 None
SNAP00000044154 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7977886:7978873:1 11/11 None
GENEFINDER00000044159 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7977886:7978873:1 11/11 None
F57H12.3 ENSEMBL cdna:known chromosome:CEL140:IV:7977886:7978873:1 gene:F57H12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7977891-7978879(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ora-1
Ensembl F57H12.3
Entrez Gene 191739 Entrez gene
SwissProt O45098 EMBL-EBI
WormBase CE17124 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC02599 Onchocerca related antigen family protein 1 [Caenorhabditis elegans] ref|NP_501334.1| Onchocerca Related Antigen family member (ora-1) [Caenorhabditis elegans] 2.0E-86
blast CAE70929 Hypothetical protein CBG17729 [Caenorhabditis briggsae] 9.0E-73
blast AAC02602 Hypothetical protein F57H12.6 [Caenorhabditis elegans] ref|NP_501333.2| F57H12.6 [Caenorhabditis elegans] 4.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR003677 EMBL-EBI Protein of unknown function, DUF 148 3.3E-36
Sequence
Target Sequence 
>C. ELEGANS:188116_AT
atctttaaaatctcagctgctcttcttcttttgactattgtatctgaagctaagccttgc
ttcggaagatgtggaggtcgtccaccaccaccatgcggacttccaccattccttgaggat
cttccttctgatgttcaaaccaagataactgaaatctggaaagattacaaagaaggagac
aagtgttatgaagaacaaggattaactcgtgaaatcatggaatctcttccaaaggatgtt
cgtaagagcattcacaagagaccaccacttccattccttcgtggacttccaaaggacatc
cttgccaagtttgatgctattttcaaggataagtcaatcccattcagtgagaagccagag
aagattgatgctctcgctcaagaagttcttactggagataacttgaagaaattccaagaa
ttcaaagagaaaaaggagaaggaaatgcaagagtacaaagacaaggaatcgaagctctcc
gcagctgccaaggtagccaacgagaagcttgaagctctcggaaaacaaaagtttgcaatc
ctcgaagaacttgatgagaacgtgaaggatgagcttttcgatttgtgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTTTAAAATCTCAGCTGCTCTTC 281 31 25 Antisense
TGCTCTTCTTCTTTTGACTATTGTA 158 581 42 Antisense
AAGATGTGGAGGTCGTCCACCACCA 331 155 90 Antisense
TCCACCATTCCTTGAGGATCTTCCT 536 589 126 Antisense
AGAGCATTCACAAGAGACCACCACT 30 71 269 Antisense
TCCATTCCTTCGTGGACTTCCAAAG 541 589 294 Antisense
GGACATCCTTGCCAAGTTTGATGCT 683 525 318 Antisense
GTCAATCCCATTCAGTGAGAAGCCA 237 463 357 Antisense
GATGCTCTCGCTCAAGAAGTTCTTA 60 415 391 Antisense
CAGCTGCCAAGGTAGCCAACGAGAA 479 203 506 Antisense
AAGGATGAGCTTTTCGATTTGTGGA 141 161 589 Antisense
Sequence Source Affymetrix Proprietary Database