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[188115_s_at]

Description C52E12.3 /REP_DB=WormBase Gene ID /WP=CE04263 /GEN=sqv-7 /TR=Q18779 /GB=AAA93454.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 94      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 64      6grp_total > 84      4grp_total > 49      6grp_highest_sub > 04_05_06      6grp_cgc > 77      6grp_high1_sub > In      6grp_cgc_sub > 04_05_06      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 547
1 2 3 4 range
A 535.8
(-3)
P 		1083
(3)
P 		957
(1.6)
P 		790.5
(-0.2)
P 		547
B 619.8
(-2.4)
P 		952.2
(2.7)
P 		968.8
(3)
P 		583
(-3)
P 		386
C 655.4
(-1.9)
P 		873.2
(3)
P 		818.4
(1.8)
P 		607.2
(-3)
P 		266
avr 603.7
(-3) 		969.5
(3) 		914.7
(2.1) 		660.2
(-2.1) 		366

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 719
1 2 3 4 5 6 range
A 750.2
(-3)
P 		839.4
(-1.9)
P 		833.4
(-2)
P 		1169.2
(2.1)
P 		1243.9
(3)
P 		1175.3
(2.2)
P 		494
B 607.9
(-3)
P 		971.9
(1.3)
P 		822.2
(-0.4)
P 		1110.1
(3)
P 		1038.5
(2.1)
P 		1033.2
(2.1)
P 		502
C 524.5
(-3)
P 		845.4
(-0.3)
P 		865.7
(-0.1)
P 		1225
(3)
P 		1120.4
(2.1)
P 		1116.1
(2.1)
P 		701
avr 627.5
(-3) 		885.6
(-0.1) 		840.4
(-0.6) 		1168.1
(3) 		1134.3
(2.6) 		1108.2
(2.3) 		541
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 195.1
(0.5)
P 		235.1
(2.3)
P 		250.2
(3)
P 		115.7
(-3)
P 		135
B 197.7
(1)
P 		235.2
(3)
P 		224.5
(2.4)
P 		124.2
(-3)
P 		111
C 216.9
(0.8)
P 		251.1
(1.9)
P 		285.2
(3)
P 		102.4
(-3)
P 		183
avr 203.2
(0.8) 		240.5
(2.4) 		253.3
(3) 		114.1
(-3) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 284
1 2 3 4 5 6 range
A 138.3
(-3)
P 		298.5
(1.1)
P 		181.5
(-1.9)
P 		296.5
(1)
P 		375.3
(3)
P 		286.2
(0.7)
P 		237
B 211.5
(-2.7)
P 		323.5
(0.3)
P 		199.6
(-3)
P 		294
(-0.5)
P 		421.9
(3)
P 		385.3
(2)
P 		222
C 194.4
(-3)
P 		258
(-0.9)
P 		220.3
(-2.1)
P 		246.4
(-1.3)
P 		362.5
(2.6)
P 		373.6
(3)
P 		179
avr 181.4
(-3) 		293.3
(0.3) 		200.5
(-2.4) 		279
(-0.1) 		386.6
(3) 		348.4
(1.9) 		205
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188115_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5270
Sequence Type Exemplar sequence
Representative Public ID C52E12.3 NCBI
Target Description C52E12.3 /REP_DB=WormBase Gene ID /WP=CE04263 /GEN=sqv-7 /TR=Q18779 /GB=AAA93454.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063035(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063035 NCBI Caenorhabditis elegans SQuashed Vulva family member (sqv-7) (sqv-7) mRNA, complete cds. 11/11 None
SNAP00000036564 ENSEMBL cdna:SNAP chromosome:CEL140:II:7011008:7012621:-1 11/11 None
GENEFINDER00000036574 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7011008:7012621:-1 11/11 None
C52E12.3 ENSEMBL cdna:known chromosome:CEL140:II:7010759:7012621:-1 gene:C52E12.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7011003-7012617(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sqv-7
Ensembl C52E12.3
Entrez Gene 174145 Entrez gene
SwissProt Q18779 EMBL-EBI
WormBase CE04263 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:14008_AT UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter-related at
ATH1-121501:253486_AT UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter-related at
DROSOPHILA_2:1626038_AT fringe connection dm
DROSGENOME1:148950_AT fringe connection dm
HG-U133A:209713_S_AT solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1 hs
HG-U133A_2:209713_S_AT solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1 hs
HG-U133_PLUS_2:209713_S_AT solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1 hs
HUGENEFL:D87449_AT solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1 hs
U133_X3P:G11463948_3P_A_AT solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1 hs
U133_X3P:HS.82635.0.S3_3P_AT solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1 hs
U133_X3P:HS.82635.0.S2_3P_AT solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1 hs
HG-U133A_2:209711_AT solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1 hs
HG-U133_PLUS_2:209711_AT solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1 hs
HG-U133A:209711_AT solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1 hs
HG-U133A_2:209712_AT solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1 hs
HG-U133_PLUS_2:209712_AT solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1 hs
HG-U133A:209712_AT solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1 hs
HG-U95AV2:37888_AT solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1 hs
HG-U95D:71405_AT Solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1 hs
HU35KSUBD:RC_R33229_F_AT Solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1 hs
MG-U74CV2:140836_AT MKIAA0260 protein mm
MOUSE430_2:1445629_AT MKIAA0260 protein mm
MOE430B:1445629_AT MKIAA0260 protein mm
Protein Similarities
Method ID Description E-Value
blast AAA93454 Squashed vulva protein 7 [Caenorhabditis elegans] ref|NP_495436.1| SQuashed Vulva family member (sqv-7) [Caenorhabditis elegans] sp|Q18779|SQV7_CAEEL UDP-sugar transporter sqv-7 (Squashed vulva protein 7) 0.0
blast CAE66011 Hypothetical protein CBG11203 [Caenorhabditis briggsae] 1.0E-176
blast AAA93454 Squashed vulva protein 7 [Caenorhabditis elegans] ref|NP_495436.1| SQuashed Vulva family member (sqv-7) [Caenorhabditis elegans] sp|Q18779|SQV7_CAEEL UDP-sugar transporter sqv-7 (Squashed vulva protein 7) 1.0E-161
blast CAE66011 Hypothetical protein CBG11203 [Caenorhabditis briggsae] 1.0E-150
blast NP_001003877 solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1 [Danio rerio] gb|AAT68140.1| UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter [Danio rerio] 6.0E-90
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495436.1 9 15-34,41-63,86-108,129-151,155-174,187-209,224-246,253-275,280-302
C52E12.3 9 15-34,41-63,86-108,129-151,155-174,187-209,224-246,253-275,280-302
SNAP00000036564 8 13-47,62-84,104-121,125-144,157-179,194-216,223-245,250-272
GENEFINDER00000036574 9 15-34,41-63,86-108,129-151,155-174,187-209,224-246,253-275,280-302
Sequence
Target Sequence 
>C. ELEGANS:188115_S_AT
attgcagccatctatgatctcagttttgatgctcttggatatactatgatcttcattaac
aatatttgcactgctgcattgggagtatatacgaaacaaaaactcgatgcaaaggatctt
ggaaagtatggattaatgttctacaattgtctgttcatgcttcttcccgctctatgcgtt
gttcaatacactggtgatctggatcgtgcctactctttcatgctttctgactcgatgaca
tcatctgtctggacttgtttcttattatcatgcatctgcggatttgttctcaattattca
cttgttctatgcactcatcacaattcggctcttactacaacctgcgttggtccaatcaaa
aatctttttgttacatacgttggaatgttctctagtggagattatgtgttccagtgggct
aactttactggaatcaatgtcagcgtatttggcagcattctttacacatatgtcactttc
cgttccaaatcaacgacgatttcctacaaaccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCAGCCATCTATGATCTCAGTT 675 5 445 Antisense
ACAATTGTCTGTTCATGCTTCTTCC 543 115 587 Antisense
CTTCCCGCTCTATGCGTTGTTCAAT 376 219 607 Antisense
CTCTTTCATGCTTTCTGACTCGATG 205 231 657 Antisense
ATCTGTCTGGACTTGTTTCTTATTA 18 35 687 Antisense
CATGCATCTGCGGATTTGTTCTCAA 187 211 713 Antisense
TGCACTCATCACAATTCGGCTCTTA 532 577 754 Antisense
CAATTCGGCTCTTACTACAACCTGC 386 179 765 Antisense
GTCAGCGTATTTGGCAGCATTCTTT 30 467 883 Antisense
TACACATATGTCACTTTCCGTTCCA 215 643 907 Antisense
TCAACGACGATTTCCTACAAACCAC 136 631 934 Antisense
Sequence Source Affymetrix Proprietary Database