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[188113_s_at] YER141W

Description T06D8.5 /REP_DB=WormBase Gene ID /WP=CE02326 /TR=Q22251 /GB=CAA88968.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=YER141W
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 37      4grp_highest_8_8 > 03      4grp_high_8_8 > 37      6grp_highest_nonorm > 73      6grp_total > 28      4grp_total > 42      6grp_highest_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 266
1 2 3 4 range
A 586.4
(-3)
P 		709.7
(3)
P 		639.8
(-0.4)
P 		652.4
(0.2)
P 		123
B 569.8
(-0.2)
P 		666.6
(3)
P 		484.9
(-3)
P 		596.2
(0.7)
P 		182
C 462.6
(-3)
P 		728.1
(3)
P 		700.6
(2.4)
P 		509.5
(-1.9)
P 		266
avr 539.6
(-3) 		701.5
(3) 		608.4
(-0.5) 		586
(-1.3) 		162

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 340
1 2 3 4 5 6 range
A 745.6
(3)
P 		437
(-3)
P 		607.1
(0.3)
P 		505.3
(-1.7)
P 		572.4
(-0.4)
P 		522.1
(-1.3)
P 		309
B 737.7
(3)
P 		538.9
(-0.9)
P 		658.8
(1.5)
P 		430.9
(-3)
P 		563.8
(-0.4)
P 		622.4
(0.7)
P 		307
C 507.9
(0.6)
P 		549.8
(2.1)
P 		430.7
(-2.1)
P 		406
(-3)
P 		441.5
(-1.8)
P 		576.4
(3)
P 		170
avr 663.7
(3) 		508.6
(-1.3) 		565.5
(0.3) 		447.4
(-3) 		525.9
(-0.8) 		573.6
(0.5) 		216
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 213.5
(3)
P 		154.1
(-0)
P 		167.3
(0.7)
P 		95.5
(-3)
P 		118
B 181.7
(3)
P 		164.6
(1.5)
P 		112.4
(-3)
P 		127
(-1.7)
P 		69
C 153.1
(-0.5)
P 		209.3
(1.7)
P 		244.2
(3)
P 		85.9
(-3)
P 		158
avr 182.8
(3) 		176
(2.5) 		174.6
(2.4) 		102.8
(-3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 175
1 2 3 4 5 6 range
A 137.4
(-1.6)
P 		155.4
(0.7)
P 		132.2
(-2.3)
P 		128.2
(-2.9)
P 		172.7
(3)
P 		127.1
(-3)
P 		46
B 256.7
(3)
P 		179.4
(-0.3)
P 		160
(-1.1)
P 		114.1
(-3)
P 		229.1
(1.8)
P 		232.1
(2)
P 		143
C 188.3
(2.7)
P 		167.8
(1.6)
P 		109.6
(-1.5)
P 		81.7
(-3)
P 		142.9
(0.3)
P 		193
(3)
P 		111
avr 194.1
(3) 		167.5
(1.1) 		133.9
(-1.2) 		108
(-3) 		181.6
(2.1) 		184.1
(2.3) 		86
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188113_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2972
Sequence Type Exemplar sequence
Representative Public ID T06D8.5 NCBI
Target Description T06D8.5 /REP_DB=WormBase Gene ID /WP=CE02326 /TR=Q22251 /GB=CAA88968.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=YER141W
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064001(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064001 NCBI Caenorhabditis elegans T06D8.5 (YER141W) mRNA, complete cds. 11/11 None
SNAP00000001111 ENSEMBL cdna:SNAP chromosome:CEL140:II:11232814:11234853:-1 11/11 None
GENEFINDER00000001124 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11232814:11235085:-1 11/11 None
T06D8.5.1 ENSEMBL cdna:known chromosome:CEL140:II:11232675:11234858:-1 gene:T06D8.5 11/11 None
T06D8.5.2 ENSEMBL cdna:known chromosome:CEL140:II:11232675:11234860:-1 gene:T06D8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11232810-11234850(-) 100.0 100.0
Public Domain and Genome References
Gene Title YER141W
Ensembl T06D8.5
Entrez Gene 174712 Entrez gene
SwissProt Q22251 EMBL-EBI
WormBase CE02326 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:248049_AT cytochrome oxidase assembly family protein at
CANINE:1594473_AT similar to COX15 homolog isoform 1 precursor cfa
CANINE:1591245_S_AT similar to COX15 homolog isoform 1 precursor cfa
CANINE_2:CFA.11471.1.A1_AT similar to COX15 homolog isoform 1 precursor cfa
CANINE_2:CFA.11471.1.A1_S_AT similar to COX15 homolog isoform 1 precursor cfa
CANINE_2:CFAAFFX.14977.1.S1_AT similar to COX15 homolog isoform 1 precursor cfa
DROSOPHILA_2:1626729_AT dm
DROSGENOME1:147819_AT dm
CHICKEN:GGAAFFX.22252.1.S1_AT similar to COX15 homolog isoform 1 precursor; cytochrome c oxidase subunit 15; cytochrome c oxidase assembly protein; COX15 (yeast) homolog, cytochrome c oxidase assembly protein gga
HG-U133B:223281_S_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) hs
HG-U133_PLUS_2:223281_S_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) hs
HG-U133_PLUS_2:219547_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) hs
HG-U133A:219547_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) hs
HG-FOCUS:219547_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) hs
HG-U133A_2:219547_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) hs
HU35KSUBB:RC_Z40345_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) hs
HU35KSUBC:RC_R35892_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) hs
HU35KSUBD:RC_AA455163_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) hs
HG-U133A:221550_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) hs
HG-U133_PLUS_2:221550_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) hs
HG-U133A_2:221550_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) hs
U133_X3P:G4758035_3P_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) hs
U133_X3P:G3603229_3P_A_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) hs
U133_X3P:G12803156_3P_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) hs
HG-U95B:49535_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) hs
HG-U95E:78619_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) hs
HG-U133_PLUS_2:235204_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) hs
HG-U133B:235204_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) hs
HG-U95E:73824_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) hs
HG-U133_PLUS_2:235855_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) hs
HG-U133B:235855_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) hs
HG-U95C:64542_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) hs
HG-U95E:83474_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) hs
HU35KSUBB:RC_R62362_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) hs
U133_X3P:HS.154188.0.A1_3P_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) hs
MOE430A:1460376_A_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) mm
MOUSE430A_2:1460376_A_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) mm
MOUSE430_2:1460376_A_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) mm
MOE430A:1426693_X_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) mm
MOUSE430A_2:1426693_X_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) mm
MOUSE430_2:1426693_X_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) mm
MOE430A:1452146_A_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) mm
MOUSE430A_2:1452146_A_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) mm
MOUSE430_2:1452146_A_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) mm
MOE430A:1437982_X_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) mm
MOUSE430A_2:1437982_X_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) mm
MOUSE430_2:1437982_X_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) mm
MG-U74BV2:107983_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) (Cox15), mRNA mm
MU19KSUBA:TC20764_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) (Cox15), mRNA mm
MU19KSUBC:TC37103_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) (Cox15), mRNA mm
MU19KSUBC:TC39224_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) (Cox15), mRNA mm
RAE230A:1377444_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) (predicted) rn
RAT230_2:1377444_AT COX15 homolog, cytochrome c oxidase assembly protein (yeast) (predicted) rn
YEAST_2:1778093_AT Protein required for the hydroxylation of heme O to form heme A, which is an essential prosthetic group for cytochrome c oxidase Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6461 protein complex assembly inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88968 Hypothetical protein T06D8.5 [Caenorhabditis elegans] ref|NP_496402.1| T06D8.5 [Caenorhabditis elegans] 0.0
blast CAE59549 Hypothetical protein CBG02945 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003780 EMBL-EBI Cytochrome oxidase assembly 4.6E-40
Pfam IPR003780 EMBL-EBI Cytochrome oxidase assembly 1.9E-23
Pfam IPR003780 EMBL-EBI Cytochrome oxidase assembly 4.6E-40
Pfam IPR003780 EMBL-EBI Cytochrome oxidase assembly 1.9E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496402.1 7 51-73,138-156,169-186,208-230,251-273,307-329,342-364
T06D8.5.1 7 51-73,138-156,169-186,208-230,251-273,307-329,342-364
T06D8.5.2 7 51-73,138-156,169-186,208-230,251-273,307-329,342-364
SNAP00000001111 7 51-73,138-156,169-186,208-230,251-273,307-329,342-364
GENEFINDER00000001124 7 99-121,186-204,217-234,256-278,299-321,355-377,390-412
Sequence
Target Sequence 
>C. ELEGANS:188113_S_AT
aagtcggggcttgatccatcgaagaattcatcggatgttccgagagtatcacagtatcgg
ctggctacccatttgacgatggcttttgtgctctattcgattttcttctggaatggactt
tctcatttagtgaagccacatgatctctcaaaggtgcgttctaaactcggagcccttcgt
ggaatgactcatggatccaagttaatggtattctctactgcaattatgggtgctttcgtc
gccggacttgacgctggtcttgtctataattcatggcctaaattcgccgaaaattggatt
cccgagaacatgttgtcgcgttcaccgacatggaagaactttttcgaaaatgatgttacc
gtgcagtttgtgcaccgaaatttggcatatttgaccgtgattagtgtactttcaacgttt
ttgattggtcgacgggcgccgattccgaagaggacacggatggcacttaatctgacagtt
gcagcagtgtttggacaggcggctcttggagttttcacacttatcaactacgtccctgtt
tggctcgcagcatgccatcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTCGGGGCTTGATCCATCGAAGA 335 157 571 Antisense
GTATCACAGTATCGGCTGGCTACCC 308 445 616 Antisense
TTGACGATGGCTTTTGTGCTCTATT 589 705 643 Antisense
GTGCTCTATTCGATTTTCTTCTGGA 546 479 658 Antisense
TGCAATTATGGGTGCTTTCGTCGCC 274 573 789 Antisense
GGACTTGACGCTGGTCTTGTCTATA 303 525 814 Antisense
GAGAACATGTTGTCGCGTTCACCGA 259 393 874 Antisense
TTTTTGATTGGTCGACGGGCGCCGA 9 661 988 Antisense
CGGGCGCCGATTCCGAAGAGGACAC 494 241 1003 Antisense
TGGACAGGCGGCTCTTGGAGTTTTC 631 545 1062 Antisense
GTTTGGCTCGCAGCATGCCATCAAT 223 453 1108 Antisense
Sequence Source Affymetrix Proprietary Database