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[188112_at] Globin

Description F49E2.4 /REP_DB=WormBase Gene ID /WP=CE01012 /TR=Q20623 /GB=CAA86423.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Globin
Cluster 6grp_total > 15      4grp_total > 30      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 130.7
(3)
M 		43
(-2.5)
A 		34.6
(-3)
A 		97.1
(0.9)
A 		96
B 155.3
(3)
P 		57.7
(-1.8)
A 		32.9
(-3)
A 		80.8
(-0.7)
A 		122
C 159.3
(3)
P 		83.6
(-0.5)
A 		31
(-3)
A 		99.4
(0.2)
A 		128
avr 148.4
(3) 		61.4
(-1.5) 		32.8
(-3) 		92.4
(0.1) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 199
1 2 3 4 5 6 range
A 208.7
(3)
P 		85.1
(-0.7)
A 		75.4
(-1)
A 		60.3
(-1.5)
A 		9.3
(-3)
A 		32.4
(-2.3)
A 		199
B 94.6
(0)
P 		174.2
(3)
P 		34.2
(-2.2)
A 		12.7
(-3)
A 		38.6
(-2)
A 		28.8
(-2.4)
A 		162
C 155.6
(3)
P 		103.1
(0.4)
A 		82.3
(-0.6)
A 		57.5
(-1.8)
A 		32.9
(-3)
A 		36.7
(-2.8)
A 		123
avr 153
(3) 		120.8
(1.5) 		64
(-1.2) 		43.5
(-2.2) 		26.9
(-3) 		32.6
(-2.7) 		126
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 47.6
(3)
M 		9.3
(-3)
A 		9
(-3)
A 		14.2
(-2.2)
A 		39
B 49.5
(3)
P 		14.3
(-2)
A 		7.6
(-3)
A 		17.2
(-1.6)
A 		42
C 52.7
(3)
P 		24
(-1.1)
A 		10.8
(-3)
A 		16.8
(-2.1)
A 		42
avr 49.9
(3) 		15.9
(-2) 		9.1
(-3) 		16.1
(-2) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 38.5
(3)
P 		30.3
(1.6)
A 		16.4
(-0.7)
A 		15.3
(-0.9)
A 		2.8
(-3)
A 		7.9
(-2.1)
A 		36
B 32.9
(0.2)
P 		58
(3)
P 		8.3
(-2.5)
A 		3.4
(-3)
A 		15.7
(-1.6)
A 		10.7
(-2.2)
A 		55
C 57.7
(3)
P 		31.5
(-0.3)
A 		21
(-1.7)
A 		11.6
(-2.9)
A 		10.7
(-3)
A 		12.3
(-2.8)
A 		47
avr 43
(3) 		39.9
(2.4) 		15.2
(-2) 		10.1
(-2.9) 		9.7
(-3) 		10.3
(-2.9) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188112_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16718
Sequence Type Exemplar sequence
Representative Public ID F49E2.4 NCBI
Target Description F49E2.4 /REP_DB=WormBase Gene ID /WP=CE01012 /TR=Q20623 /GB=CAA86423.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Globin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077213(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077213 NCBI Caenorhabditis elegans F49E2.4 (Globin) mRNA, complete cds. 11/11 None
SNAP00000006382 ENSEMBL cdna:SNAP chromosome:CEL140:X:9573976:9575798:-1 11/11 None
GENEFINDER00000006384 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9573976:9575814:-1 11/11 None
F49E2.4 ENSEMBL cdna:known chromosome:CEL140:X:9573976:9575798:-1 gene:F49E2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9573975-9575798(-) 100.0 100.0
Public Domain and Genome References
Gene Title Globin
Ensembl F49E2.4
Entrez Gene 186039 Entrez gene
SwissProt Q20623 EMBL-EBI
WormBase CE01012 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86423 Hypothetical protein F49E2.4 [Caenorhabditis elegans] ref|NP_509614.1| F49E2.4 [Caenorhabditis elegans] 1.0E-113
blast CAE69791 Hypothetical protein CBG16082 [Caenorhabditis briggsae] 1.0E-106
blast CAE17922 Hypothetical protein R102.9 [Caenorhabditis elegans] ref|NP_001023339.1| R102.9 [Caenorhabditis elegans] 1.0E-45
Sequence
Target Sequence 
>C. ELEGANS:188112_AT
tttggaggcgcgcgaaaaccgacaacgttggaaagaagattctgcagacgctcattgaaa
aacgtccaaagtttgctgagtatttcggtattcagagtgaaagtcttgatattcgtgctt
tgaatcaaagcaaggaatttcatttacaggcgcaccgtatccagaacttccttgacacgg
cagtcggatctctcggtttttgtccaatttccagtgtttttgacatggcacatcgtattg
gacaaattcatttctacagaggagtcaattttggagcagataactggcttgtcttcaaaa
aagtaacagttgatcaagtaacaaccggaacaacggatagctccaaagaaaaggaggata
ctaatagcaatggaactgcaaatggaaaagtggatactgatgcaagtcttatcccgattg
ctgatattaataatgtatacagcggagaaaattgcttggctcgtctgggatggaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGGAGGCGCGCGAAAACCGACAA 620 653 86 Antisense
GAAGATTCTGCAGACGCTCATTGAA 371 337 120 Antisense
AAGTTTGCTGAGTATTTCGGTATTC 427 157 154 Antisense
GGAATTTCATTTACAGGCGCACCGT 155 533 219 Antisense
ACCGTATCCAGAACTTCCTTGACAC 396 87 239 Antisense
TTCCTTGACACGGCAGTCGGATCTC 72 697 253 Antisense
GATCTCTCGGTTTTTGTCCAATTTC 13 415 272 Antisense
GACATGGCACATCGTATTGGACAAA 285 369 307 Antisense
GGAGCAGATAACTGGCTTGTCTTCA 42 521 358 Antisense
GATGCAAGTCTTATCCCGATTGCTG 286 413 484 Antisense
TGCTTGGCTCGTCTGGGATGGAACA 680 577 538 Antisense
Sequence Source Affymetrix Proprietary Database