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[188111_at]

Description F45E4.2 /REP_DB=WormBase Gene ID /WP=CE10494 /GEN=plp-1 /TR=Q94230 /GB=AAK29814.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 82      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 37      6grp_total > 81      4grp_total > 09      6grp_highest_sub > 04      6grp_cgc > 86      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6948
1 2 3 4 range
A 3954.5
(-3)
P 		5286.9
(-1.8)
P 		4904.4
(-2.2)
P 		10902.9
(3)
P 		6948
B 4430.5
(-3)
P 		5270.1
(-1.5)
P 		5180.7
(-1.7)
P 		7769.5
(3)
P 		3339
C 4196.7
(-3)
P 		4401.8
(-2.7)
P 		4221.6
(-3)
P 		8754
(3)
P 		4557
avr 4193.9
(-3) 		4986.3
(-2) 		4768.9
(-2.3) 		9142.1
(3) 		4948

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3050
1 2 3 4 5 6 range
A 3939
(-3)
P 		4129.7
(-2.6)
P 		5260.4
(-0.4)
P 		6989.4
(3)
P 		5472
(0)
P 		4469.8
(-2)
P 		3050
B 4012
(-3)
P 		4055.7
(-2.9)
P 		5419
(0.3)
P 		6547.7
(3)
P 		5877.9
(1.4)
P 		4591
(-1.6)
P 		2536
C 4073.6
(-2.9)
P 		4045.5
(-3)
P 		4682.5
(-1.3)
P 		6231.4
(3)
P 		5188.2
(0.1)
P 		4415.1
(-2)
P 		2186
avr 4008.2
(-3) 		4077
(-2.8) 		5120.6
(-0.4) 		6589.5
(3) 		5512.7
(0.5) 		4492
(-1.9) 		2581
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 508
1 2 3 4 range
A 1439.8
(0.9)
P 		1147.6
(-3)
P 		1282.1
(-1.2)
P 		1596
(3)
P 		448
B 1412.9
(-0.2)
P 		1301.6
(-1.7)
P 		1200.5
(-3)
P 		1655.7
(3)
P 		455
C 1389.2
(0.5)
P 		1265.5
(-3)
P 		1471.4
(2.9)
P 		1476.1
(3)
P 		211
avr 1414
(0.1) 		1238.2
(-3) 		1318
(-1.6) 		1575.9
(3) 		338

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1662
1 2 3 4 5 6 range
A 726.1
(-3)
P 		1468.7
(1.3)
P 		1145.6
(-0.6)
P 		1772.7
(3)
P 		1651.2
(2.3)
P 		1088.3
(-0.9)
P 		1047
B 1396
(-2.6)
P 		1350
(-2.8)
P 		1315.9
(-3)
P 		1734.3
(-0.7)
P 		2388.1
(3)
P 		1712
(-0.8)
P 		1072
C 1509.9
(0.9)
P 		1234.4
(-2.5)
P 		1191.8
(-3)
P 		1253.1
(-2.2)
P 		1678.8
(3)
P 		1478
(0.5)
P 		487
avr 1210.7
(-3) 		1351
(-1.8) 		1217.8
(-2.9) 		1586.7
(0.2) 		1906
(3) 		1426.1
(-1.1) 		695
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188111_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8985
Sequence Type Exemplar sequence
Representative Public ID F45E4.2 NCBI
Target Description F45E4.2 /REP_DB=WormBase Gene ID /WP=CE10494 /GEN=plp-1 /TR=Q94230 /GB=AAK29814.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068840(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068840 NCBI Caenorhabditis elegans Pur alpha Like Protein family member (plp-1) (plp-1) mRNA, complete cds. 11/11 A 
SNAP00000024164 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7633414:7634415:1 11/11 None
GENEFINDER00000024182 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7633414:7634415:1 11/11 None
F45E4.2.3 ENSEMBL cdna:known chromosome:CEL140:IV:7633337:7634570:1 gene:F45E4.2 11/11 None
F45E4.2.2 ENSEMBL cdna:known chromosome:CEL140:IV:7633337:7634570:1 gene:F45E4.2 11/11 None
F45E4.2.1 ENSEMBL cdna:known chromosome:CEL140:IV:7633344:7634620:1 gene:F45E4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7633419-7634421(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol plp-1
Ensembl F45E4.2
Entrez Gene 177540 Entrez gene
SwissProt Q94230 EMBL-EBI
WormBase CE10494 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:15643_S_AT PUR alpha-1 protein at
ATH1-121501:265677_AT PUR alpha-1 protein at
CANINE:1596977_AT similar to Transcriptional activator protein PUR-alpha (Purine-rich single-stranded DNA-binding protein alpha) cfa
CANINE_2:CFA.14651.1.A1_S_AT similar to Transcriptional activator protein PUR-alpha (Purine-rich single-stranded DNA-binding protein alpha) cfa
CANINE_2:CFA.9106.1.S1_AT similar to Transcriptional activator protein PUR-alpha (Purine-rich single-stranded DNA-binding protein alpha) cfa
CANINE_2:CFAAFFX.9552.1.S1_AT similar to Transcriptional activator protein PUR-alpha (Purine-rich single-stranded DNA-binding protein alpha) cfa
DROSOPHILA_2:1637411_S_AT Purine-rich binding protein- dm
DROSGENOME1:153825_AT Purine-rich binding protein- dm
HG-U133A:204021_S_AT purine-rich element binding protein A hs
HG-U133_PLUS_2:204021_S_AT purine-rich element binding protein A hs
HG-U133A_2:204021_S_AT purine-rich element binding protein A hs
HG-U95AV2:35221_AT purine-rich element binding protein A hs
HU35KSUBD:RC_AA477831_S_AT purine-rich element binding protein A hs
HUGENEFL:X91648_AT purine-rich element binding protein A hs
HUGENEFL:M96684_AT purine-rich element binding protein A hs
U133_X3P:G5032006_3P_A_AT purine-rich element binding protein A hs
U133_X3P:HS.29117.0.S2_3P_AT purine-rich element binding protein A hs
HG-U133A_2:204020_AT purine-rich element binding protein A hs
HG-FOCUS:204020_AT purine-rich element binding protein A hs
HG-U133_PLUS_2:204020_AT purine-rich element binding protein A hs
HG-U133A:204020_AT purine-rich element binding protein A hs
HG-U95AV2:41344_S_AT purine-rich element binding protein A hs
HG-U133_PLUS_2:229167_AT Purine-rich element binding protein A hs
HG-U133B:229167_AT Purine-rich element binding protein A hs
U133_X3P:HS.115850.0.A1_3P_AT Purine-rich element binding protein A hs
HG-U95E:88570_AT Purine-rich element binding protein A hs
HG-U133A_2:213806_AT Purine-rich element binding protein A hs
HG-U133_PLUS_2:213806_AT Purine-rich element binding protein A hs
HG-U133A:213806_AT Purine-rich element binding protein A hs
HG-U95AV2:41345_AT Purine-rich element binding protein A hs
U133_X3P:HS.29117.1.A1_3P_AT Purine-rich element binding protein A hs
MU11KSUBA:U02098_S_AT purine rich element binding protein A mm
MG-U74AV2:103501_AT purine rich element binding protein A mm
MOE430A:1449934_AT purine rich element binding protein A mm
MOUSE430A_2:1449934_AT purine rich element binding protein A mm
MOUSE430_2:1449934_AT purine rich element binding protein A mm
MOE430A:1420628_AT purine rich element binding protein A mm
MOUSE430A_2:1420628_AT purine rich element binding protein A mm
MOUSE430_2:1420628_AT purine rich element binding protein A mm
MG-U74BV2:111767_AT Purine rich element binding protein A (Pura), mRNA mm
MG-U74BV2:114967_AT Purine rich element binding protein A (Pura), mRNA mm
MOE430A:1438219_AT Purine rich element binding protein A (Pura), mRNA mm
MOUSE430A_2:1438219_AT Purine rich element binding protein A (Pura), mRNA mm
MOUSE430_2:1438219_AT Purine rich element binding protein A (Pura), mRNA mm
MOUSE430_2:1456898_AT Purine rich element binding protein A (Pura), mRNA mm
MOE430B:1456898_AT Purine rich element binding protein A (Pura), mRNA mm
MU19KSUBB:TC31927_AT Purine rich element binding protein A (Pura), mRNA mm
MU19KSUBC:TC36069_AT Purine rich element binding protein A (Pura), mRNA mm
RAE230A:1377119_AT purine rich element binding protein A (predicted) rn
RAT230_2:1377119_AT purine rich element binding protein A (predicted) rn
RAE230A:1375682_AT Purine rich element binding protein A (predicted) rn
RAT230_2:1375682_AT Purine rich element binding protein A (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAK29814 Pur alpha like protein protein 1 [Caenorhabditis elegans] ref|NP_501241.1| Pur alpha Like Protein family member (plp-1) [Caenorhabditis elegans] 1.0E-123
blast CAE61929 Hypothetical protein CBG05926 [Caenorhabditis briggsae] 1.0E-114
Protein Domains
Database ID Description E-Value
Pfam IPR006628 EMBL-EBI PUR-alpha/beta/gamma, DNA/RNA-binding 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:188111_AT
ctactcaccagctcactgttcaatacaagcgatactacatcgatgtcaatgagaacactc
gtggacgttacatcaagattgctgagttgggtacaaattacaagagccgtattattctaa
gcatcgtcgctgccaaggcaatcgtgagtgagatttcgaagatgcttgccctcattgatg
aaccatcaactggtgaacacgctccaaaggaaagctctctcatcaaatcagagactctca
atgtcgacgggagaaaattctacgtcgatctgaaggaaaatgttcgtggtcgctttttgc
gcattgctcagatgccgatgaacccacgtcaaactcgccaacaaatcgccattccatccg
atggaatcgccgaaattcataaggtgctaaccgaatatttggccaagttcggagagggac
acgaacaggagaacaccaacactccaaaaatcactgctgaaaacaaatcgttccttttcc
attccggaaagaacgatcgtggagagtttgttcgcatctcggaaatcaaactca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTACTCACCAGCTCACTGTTCAATA 168 227 65 Antisense
GAGAACACTCGTGGACGTTACATCA 36 391 115 Antisense
GAGCCGTATTATTCTAAGCATCGTC 27 387 168 Antisense
TATTCTAAGCATCGTCGCTGCCAAG 561 663 177 Antisense
GCTGCCAAGGCAATCGTGAGTGAGA 17 299 193 Antisense
TTTCGAAGATGCTTGCCCTCATTGA 470 669 218 Antisense
GCTTGCCCTCATTGATGAACCATCA 217 307 228 Antisense
ACCATCAACTGGTGAACACGCTCCA 65 85 246 Antisense
CAGAGACTCTCAATGTCGACGGGAG 543 205 293 Antisense
ATTGCTCAGATGCCGATGAACCCAC 222 7 367 Antisense
GTTCGCATCTCGGAAATCAAACTCA 181 443 574 Antisense
Sequence Source Affymetrix Proprietary Database