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[188110_s_at]

Description K04G2.8B /REP_DB=WormBase Gene ID /WP=CE18016 /GEN=apr-1 /TR=O62302 /GB=CAB00048.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 07      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 76      6grp_total > 18      4grp_total > 54      6grp_highest_sub > De      6grp_cgc > 13      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 630
1 2 3 4 range
A 959.6
(3)
P 		657.4
(-0)
P 		574.1
(-0.9)
P 		364
(-3)
P 		596
B 993.6
(3)
P 		564.5
(-1.4)
P 		552.5
(-1.5)
P 		410.6
(-3)
P 		583
C 982.4
(3)
P 		600
(-0.7)
P 		646
(-0.3)
P 		369.7
(-3)
P 		613
avr 978.5
(3) 		607.3
(-0.7) 		590.9
(-0.9) 		381.4
(-3) 		597

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 659
1 2 3 4 5 6 range
A 1326.4
(3)
P 		1106.9
(1)
P 		667
(-3)
P 		933.5
(-0.6)
P 		907
(-0.8)
P 		997
(0)
P 		659
B 1109.4
(3)
P 		1074.3
(2.4)
P 		875.3
(-1.1)
P 		978
(0.7)
P 		763.7
(-3)
P 		950.9
(0.2)
P 		346
C 1192.8
(3)
P 		932.2
(-2.8)
P 		1028.4
(-0.6)
P 		1091.4
(0.8)
P 		993.4
(-1.4)
P 		921.7
(-3)
P 		271
avr 1209.5
(3) 		1037.8
(0.1) 		856.9
(-3) 		1001
(-0.5) 		888
(-2.5) 		956.5
(-1.3) 		353
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 296
1 2 3 4 range
A 349.4
(3)
P 		142.7
(-1.2)
P 		150.1
(-1)
P 		53.3
(-3)
P 		296
B 316.8
(3)
P 		139.4
(-1.6)
P 		128
(-1.9)
P 		87.5
(-3)
P 		229
C 325.2
(3)
P 		172.5
(-0.5)
P 		225.2
(0.7)
P 		62.3
(-3)
P 		263
avr 330.5
(3) 		151.5
(-1.1) 		167.8
(-0.7) 		67.7
(-3) 		263

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 297
1 2 3 4 5 6 range
A 244.5
(-0.6)
P 		393.7
(3)
P 		145.3
(-3)
P 		236.8
(-0.8)
P 		273.7
(0.1)
P 		242.7
(-0.6)
P 		248
B 386
(3)
P 		357.6
(2)
P 		212.5
(-3)
P 		259
(-1.4)
P 		310.3
(0.4)
P 		354.6
(1.9)
P 		174
C 442.1
(3)
P 		284.5
(-1.2)
P 		261.8
(-1.9)
P 		219.5
(-3)
P 		321.5
(-0.3)
P 		308.6
(-0.6)
P 		223
avr 357.5
(3) 		345.3
(2.5) 		206.5
(-3) 		238.4
(-1.7) 		301.8
(0.8) 		302
(0.8) 		151
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188110_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1717
Sequence Type Exemplar sequence
Representative Public ID K04G2.8B NCBI
Target Description K04G2.8B /REP_DB=WormBase Gene ID /WP=CE18016 /GEN=apr-1 /TR=O62302 /GB=CAB00048.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026376(11), NM_059816(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026376 NCBI Caenorhabditis elegans APC Related family member (apr-1) (apr-1) mRNA, complete cds. 11/11 None
NM_059816 NCBI Caenorhabditis elegans APC Related family member (apr-1) (apr-1) mRNA, complete cds. 11/11 None
SNAP00000009076 ENSEMBL cdna:SNAP chromosome:CEL140:I:8058169:8063267:1 11/11 None
GENEFINDER00000009092 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8058169:8063267:1 11/11 None
K04G2.8a ENSEMBL cdna:known chromosome:CEL140:I:8058169:8063350:1 gene:K04G2.8 11/11 None
K04G2.8b.1 ENSEMBL cdna:known chromosome:CEL140:I:8058169:8063591:1 gene:K04G2.8 11/11 None
K04G2.8b.2 ENSEMBL cdna:known chromosome:CEL140:I:8058169:8063915:1 gene:K04G2.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8058099-8063198(+) 100.0 100.0
Public Domain and Genome References
Ensembl K04G2.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00048 Hypothetical protein K04G2.8b [Caenorhabditis elegans] ref|NP_001021547.1| APC Related family member (apr-1) [Caenorhabditis elegans] 0.0
blast CAB00045 Hypothetical protein K04G2.8a [Caenorhabditis elegans] ref|NP_492217.2| APC Related family member (apr-1) [Caenorhabditis elegans] gb|AAC47747.1| APR-1 [Caenorhabditis elegans] 0.0
blast CAE63707 Hypothetical protein CBG08224 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:188110_S_AT
ggaggatcctgatgcgactcagtttgatgatggagttgatgcacaactaactatcgattg
ttcaatgatttctagtggaagcggttcatcgcaaagaaatgaaactacgacaacgtcacg
agattcaaaagctttagctacttccacaccaaaaggatctgcatcttcactcccaggagt
tcgacaagccacccgagtatcaacgaatggaaagtcaagactgcctgttccaaaaacgaa
tggatcacttgttgataagaatcccaagccaatcatcgcttcccggcggccacgattgcc
accgaagccgacacttttaaaagataagcactatccagaagaggattcgattgagaatca
gacgagagatgatacgatatatgtgaatgctccagttgttgaggcagaacaagaacgaat
ttatatgaatgcattgaagcaacagaagaacattgagcaatcaccgtcaattggaaacgg
atcacctatagctaaatctgcaattgtaacgccctacaattatcagaaaccgcctttcac
tggtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGATCCTGATGCGACTCAGTTT 171 517 2961 Antisense
CAAAAGCTTTAGCTACTTCCACACC 549 189 3086 Antisense
CAAAAGGATCTGCATCTTCACTCCC 50 191 3110 Antisense
TCACTCCCAGGAGTTCGACAAGCCA 116 627 3127 Antisense
ACAAGCCACCCGAGTATCAACGAAT 634 111 3144 Antisense
GAAAGTCAAGACTGCCTGTTCCAAA 321 361 3170 Antisense
GATATATGTGAATGCTCCAGTTGTT 335 427 3336 Antisense
ACGGATCACCTATAGCTAAATCTGC 137 95 3437 Antisense
TAAATCTGCAATTGTAACGCCCTAC 146 641 3453 Antisense
AACGCCCTACAATTATCAGAAACCG 631 145 3468 Antisense
TATCAGAAACCGCCTTTCACTGGTC 224 659 3481 Antisense
Sequence Source Affymetrix Proprietary Database