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[188109_s_at] lectin

Description C25A1.8 /REP_DB=WormBase Gene ID /WP=CE08374 /TR=Q9XVS3 /GB=CAB02756.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=lectin
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 88      4grp_high_8_8 > 15      6grp_highest_nonorm > 59      6grp_total > 98      4grp_total > 08      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 497
1 2 3 4 range
A 110.7
(-3)
P 		145.9
(-2.4)
P 		206.1
(-1.5)
P 		480
(3)
P 		369
B 79.4
(-3)
A 		111
(-2.6)
M 		184.6
(-1.7)
P 		565.8
(3)
P 		486
C 68.7
(-3)
M 		154.5
(-1.8)
A 		214.2
(-1)
P 		501.9
(3)
P 		433
avr 86.3
(-3) 		137.1
(-2.3) 		201.6
(-1.4) 		515.9
(3) 		430

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7625
1 2 3 4 5 6 range
A 235.6
(-2.9)
P 		121.7
(-3)
P 		355
(-2.8)
P 		732.9
(-2.5)
P 		4305.9
(0.3)
P 		7746.6
(3)
P 		7625
B 190.6
(-3)
P 		154.6
(-3)
P 		354.1
(-2.8)
P 		819.2
(-2.4)
P 		4461.3
(0.8)
P 		6953.5
(3)
P 		6799
C 213.3
(-2.9)
P 		158.3
(-3)
P 		424.2
(-2.8)
P 		750.2
(-2.5)
P 		4686
(1.1)
P 		6745.2
(3)
P 		6587
avr 213.2
(-2.9) 		144.9
(-3) 		377.8
(-2.8) 		767.4
(-2.5) 		4484.4
(0.7) 		7148.4
(3) 		7004
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 40.3
(-1.7)
P 		31.7
(-3)
P 		53.9
(0.5)
P 		70.3
(3)
P 		39
B 25.3
(-3)
A 		27.4
(-2.9)
M 		42.8
(-1.9)
P 		120.6
(3)
P 		95
C 22.8
(-3)
M 		44.4
(-0.9)
A 		74.6
(2)
P 		84.6
(3)
P 		62
avr 29.5
(-3) 		34.5
(-2.5) 		57.1
(-0.3) 		91.8
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2550
1 2 3 4 5 6 range
A 43.4
(-3)
P 		43.3
(-3)
P 		77.3
(-2.9)
P 		185.9
(-2.5)
P 		1299.3
(1.1)
P 		1886.1
(3)
P 		1843
B 66.3
(-3)
P 		51.5
(-3)
P 		86
(-2.9)
P 		217
(-2.6)
P 		1812.6
(1.2)
P 		2592.9
(3)
P 		2541
C 79.1
(-2.9)
P 		48.3
(-3)
P 		108
(-2.8)
P 		150.9
(-2.7)
P 		1516.3
(1)
P 		2258
(3)
P 		2210
avr 62.9
(-3) 		47.7
(-3) 		90.4
(-2.9) 		184.6
(-2.6) 		1542.7
(1.1) 		2245.7
(3) 		2198
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188109_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2078
Sequence Type Exemplar sequence
Representative Public ID C25A1.8 NCBI
Target Description C25A1.8 /REP_DB=WormBase Gene ID /WP=CE08374 /TR=Q9XVS3 /GB=CAB02756.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=lectin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060281(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060281 NCBI Caenorhabditis elegans C25A1.8 (lectin) mRNA, complete cds. 11/11 A 
SNAP00000000657 ENSEMBL cdna:SNAP chromosome:CEL140:I:10192767:10193567:-1 11/11 None
GENEFINDER00000000673 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10192767:10193567:-1 11/11 None
C25A1.8 ENSEMBL cdna:known chromosome:CEL140:I:10192599:10193569:-1 gene:C25A1.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10192697-10193498(-) 100.0 100.0
Public Domain and Genome References
Gene Title lectin
Ensembl C25A1.8
Entrez Gene 172885 Entrez gene
SwissProt Q9XVS3 EMBL-EBI
WormBase CE08374 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02756 Hypothetical protein C25A1.8 [Caenorhabditis elegans] ref|NP_492682.1| C25A1.8 [Caenorhabditis elegans] 1.0E-138
blast CAE59878 Hypothetical protein CBG03358 [Caenorhabditis briggsae] 1.0E-107
blast AAO38621 Hypothetical protein K10B2.3a [Caenorhabditis elegans] ref|NP_495283.2| K10B2.3a [Caenorhabditis elegans] 9.0E-91
Sequence
Target Sequence 
>C. ELEGANS:188109_S_AT
aaaacgacgaacagccgcatcaacgactgacgttctacaactgggactacaaggatctcg
gcacaacggcattcgaagacatctcgttcccagctcgacagccgccagccttcgtcaatc
agactgagaagtgtcccgatggatggcttcggttcgccgattcgtgctactggatcgaga
aggagcttcttggattcgccaaggccgagagaaattgcttcgagaagcagtcaacactgt
tcgtggccaattcgattgaagagtgggacgcaattcgtgttcaagccaaggaagccttct
tttcgtggatcggacttgtcagattcacccattacgagaagttggagcagttgccaagat
ggcagactgaaggagctctcaatccaacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACGACGAACAGCCGCATCAACG 43 131 137 Antisense
CTGGGACTACAAGGATCTCGGCACA 269 241 177 Antisense
GGCATTCGAAGACATCTCGTTCCCA 431 537 204 Antisense
GCCAGCCTTCGTCAATCAGACTGAG 12 281 240 Antisense
GTCCCGATGGATGGCTTCGGTTCGC 362 473 269 Antisense
TCGCCGATTCGTGCTACTGGATCGA 658 599 290 Antisense
GTCAACACTGTTCGTGGCCAATTCG 636 463 366 Antisense
GACGCAATTCGTGTTCAAGCCAAGG 172 381 403 Antisense
AGCCTTCTTTTCGTGGATCGGACTT 627 81 429 Antisense
ACTTGTCAGATTCACCCATTACGAG 254 99 450 Antisense
GACTGAAGGAGCTCTCAATCCAACC 527 375 501 Antisense
Sequence Source Affymetrix Proprietary Database