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[188108_at] glycosylphosphatidylinositol (GPI)-linked signalling protein, (Ly-6 superfamily)

Description Y48B6A.9 /REP_DB=WormBase Gene ID /WP=CE22124 /GEN=hot-7 /TR=Q9U2A3 /GB=CAB54445.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 12      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_total > 22      4grp_total > 47      6grp_cgc > 71      6grp_high1_sub > De      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 234
1 2 3 4 range
A 333.9
(3)
P 		184.2
(-1.1)
P 		114.6
(-3)
P 		146.7
(-2.1)
P 		219
B 344.9
(3)
P 		175.3
(-1.9)
P 		138.7
(-3)
P 		149.3
(-2.7)
P 		206
C 348.9
(3)
P 		156.5
(-1.9)
P 		114.8
(-3)
P 		175
(-1.5)
P 		234
avr 342.6
(3) 		172
(-1.7) 		122.7
(-3) 		157
(-2.1) 		220

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 330
1 2 3 4 5 6 range
A 266.6
(1.5)
P 		286.6
(1.9)
P 		337.3
(3)
P 		143
(-1.1)
P 		97.1
(-2.1)
P 		55.9
(-3)
A 		281
B 287.2
(1.5)
P 		333.9
(2.3)
P 		371.8
(3)
P 		137.6
(-1.3)
P 		114.3
(-1.7)
P 		41.9
(-3)
P 		330
C 289.5
(2.7)
P 		301.9
(3)
P 		241.1
(1.5)
P 		148.3
(-0.7)
P 		76.4
(-2.4)
P 		51.9
(-3)
P 		250
avr 281.1
(2.2) 		307.5
(2.8) 		316.7
(3) 		143
(-0.9) 		95.9
(-2) 		49.9
(-3) 		267
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 121.6
(3)
P 		40
(-1.9)
P 		30
(-2.5)
P 		21.5
(-3)
P 		100
B 110
(3)
P 		43.3
(-2.1)
P 		32.1
(-3)
P 		31.8
(-3)
P 		78
C 115.5
(3)
P 		45
(-1.9)
P 		40
(-2.3)
P 		29.5
(-3)
P 		86
avr 115.7
(3) 		42.8
(-2) 		34
(-2.6) 		27.6
(-3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 49.1
(-0.6)
P 		101.9
(3)
P 		73.5
(1.1)
P 		36.3
(-1.5)
P 		29.3
(-1.9)
P 		13.6
(-3)
A 		88
B 99.9
(2.3)
P 		111.1
(3)
P 		90.3
(1.7)
P 		36.4
(-1.7)
P 		46.4
(-1.1)
P 		15.6
(-3)
P 		96
C 107.3
(3)
P 		92.1
(2)
P 		61.4
(-0.1)
P 		29.8
(-2.2)
P 		24.7
(-2.5)
P 		17.4
(-3)
P 		90
avr 85.4
(1.9) 		101.7
(3) 		75.1
(1.1) 		34.2
(-1.7) 		33.5
(-1.7) 		15.5
(-3) 		86
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188108_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3924
Sequence Type Exemplar sequence
Representative Public ID Y48B6A.9 NCBI
Target Description Y48B6A.9 /REP_DB=WormBase Gene ID /WP=CE22124 /GEN=hot-7 /TR=Q9U2A3 /GB=CAB54445.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064563(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064563 NCBI Caenorhabditis elegans Homolog of Odr-2(Two) family member (hot-7) (hot-7) mRNA, complete cds. 11/11 None
GENEFINDER00000022977 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14211330:14213585:1 11/11 None
Y48B6A.9 ENSEMBL cdna:known chromosome:CEL140:II:14211330:14212993:1 gene:Y48B6A.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14211326-14213582(+) 100.0 100.0
Public Domain and Genome References
Gene Title glycosylphosphatidylinositol (GPI)-linked signalling protein, (Ly-6 superfamily)
Gene Symbol hot-7
Ensembl Y48B6A.9
Entrez Gene 191682 Entrez gene
SwissProt Q9U2A3 EMBL-EBI
WormBase CE36459 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54445 Hypothetical protein Y48B6A.9 [Caenorhabditis elegans] ref|NP_496964.2| Homolog of Odr-2(Two) family member (hot-7) [Caenorhabditis elegans] tpg|DAA00038.1| TPA: Ly-6-related protein HOT-7 [Caenorhabditis elegans] 1.0E-104
blast CAB54445 Hypothetical protein Y48B6A.9 [Caenorhabditis elegans] ref|NP_496964.2| Homolog of Odr-2(Two) family member (hot-7) [Caenorhabditis elegans] tpg|DAA00038.1| TPA: Ly-6-related protein HOT-7 [Caenorhabditis elegans] 3.0E-96
blast CAE59448 Hypothetical protein CBG02824 [Caenorhabditis briggsae] 1.0E-72
blast CAE59448 Hypothetical protein CBG02824 [Caenorhabditis briggsae] 2.0E-72
Sequence
Target Sequence 
>C. ELEGANS:188108_AT
gttggaatggtatctgctagctgttttgtttgctcgtcaccgaatattgaaaatcactat
ggctcatttttcgagaatcctcgagaaattcagccaacctatgctggacgtgtgattgat
tgtgagaagaatgaattcaaatcacaagactgcccgggtccgtgtttttcattaaatgtt
tccagctctgtgatagattcggattttggaacttcatatggctgctcgacaggaatcatt
cctgacgatgtggatggggaagaagcttgtacaacaaagactatatcgattagaacatct
ccaatttattcagtcactgcgacatactgtttgtgctctgaaaataattgtaatccaccc
atacatcccgtgattcggagaaggtcgaaacccgtgaagaacagtggaaaaacggtttac
ttcgcgaatcaatcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGGAATGGTATCTGCTAGCTGTT 24 437 49 Antisense
GCTAGCTGTTTTGTTTGCTCGTCAC 321 303 64 Antisense
AATCCTCGAGAAATTCAGCCAACCT 567 167 124 Antisense
AGCCAACCTATGCTGGACGTGTGAT 455 83 140 Antisense
ATTCAAATCACAAGACTGCCCGGGT 184 13 183 Antisense
CATTAAATGTTTCCAGCTCTGTGAT 58 217 218 Antisense
GAACTTCATATGGCTGCTCGACAGG 95 351 257 Antisense
CATCTCCAATTTATTCAGTCACTGC 672 211 344 Antisense
ACTGCGACATACTGTTTGTGCTCTG 11 99 364 Antisense
CACCCATACATCCCGTGATTCGGAG 166 201 404 Antisense
AACGGTTTACTTCGCGAATCAATCG 491 143 459 Antisense
Sequence Source Affymetrix Proprietary Database