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[188107_at] Acid phosphatase

Description B0361.7 /REP_DB=WormBase Gene ID /WP=CE24767 /GB=AAK18870.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Acid phosphatase
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 78      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 81      6grp_total > 98      4grp_total > 04      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 411
1 2 3 4 range
A 247.9
(0.2)
P 		106.8
(-3)
P 		126
(-2.6)
P 		375.2
(3)
P 		268
B 209.4
(-1.7)
P 		143
(-2.7)
P 		126.6
(-3)
P 		518.1
(3)
P 		392
C 220.5
(-1.3)
P 		155.7
(-2.3)
P 		109.4
(-3)
P 		492.7
(3)
P 		383
avr 225.9
(-1.2) 		135.2
(-2.7) 		120.7
(-3) 		462
(3) 		341

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 234.8
(-1.5)
P 		203.8
(-3)
P 		248.3
(-0.8)
P 		209.9
(-2.7)
P 		301.5
(1.7)
P 		327.7
(3)
P 		124
B 327
(3)
P 		232.3
(-2.8)
P 		277.9
(-0)
P 		229.8
(-3)
P 		315
(2.3)
P 		315.9
(2.3)
P 		97
C 276.2
(0)
P 		209.8
(-3)
P 		244.6
(-1.4)
P 		283
(0.4)
P 		254.6
(-0.9)
P 		340.9
(3)
P 		131
avr 279.3
(0.4) 		215.3
(-3) 		256.9
(-0.8) 		240.9
(-1.6) 		290.4
(1) 		328.2
(3) 		113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 90.2
(3)
P 		23.2
(-3)
P 		32.9
(-2.1)
P 		54.9
(-0.2)
P 		67
B 66.8
(-0.2)
P 		35.3
(-2.6)
P 		29.3
(-3)
P 		110.4
(3)
P 		81
C 73
(1.7)
P 		44.8
(-2.1)
P 		38.1
(-3)
P 		83.1
(3)
P 		45
avr 76.7
(2.3) 		34.4
(-2.9) 		33.4
(-3) 		82.8
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 43.3
(-3)
P 		72.5
(0.7)
P 		54.1
(-1.6)
P 		53.2
(-1.8)
P 		91
(3)
P 		79.8
(1.6)
P 		48
B 113.8
(1.7)
P 		77.3
(-1.5)
P 		67.5
(-2.4)
P 		60.9
(-3)
P 		128
(3)
P 		117.8
(2.1)
P 		67
C 102.4
(1.8)
P 		64
(-2.3)
P 		62.3
(-2.4)
P 		56.9
(-3)
P 		82.4
(-0.3)
P 		114.1
(3)
P 		57
avr 86.5
(0.8) 		71.3
(-1.2) 		61.3
(-2.4) 		57
(-3) 		100.5
(2.6) 		103.9
(3) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188107_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6108
Sequence Type Exemplar sequence
Representative Public ID B0361.7 NCBI
Target Description B0361.7 /REP_DB=WormBase Gene ID /WP=CE24767 /GB=AAK18870.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Acid phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066203(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066203 NCBI Caenorhabditis elegans B0361.7 (B0361.7) mRNA, complete cds. 11/11 None
SNAP00000011050 ENSEMBL cdna:SNAP chromosome:CEL140:III:7284029:7285794:-1 10/11 None
GENEFINDER00000011059 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7284029:7285794:-1 11/11 None
B0361.7 ENSEMBL cdna:known chromosome:CEL140:III:7283843:7285805:-1 gene:B0361.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7284026-7285792(-) 100.0 100.0
Public Domain and Genome References
Gene Title Acid phosphatase
Ensembl B0361.7
Entrez Gene 176030 Entrez gene
SwissProt Q10944 EMBL-EBI
WormBase CE32100 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1591791_AT similar to Lysosomal acid phosphatase precursor (LAP) cfa
CANINE_2:CFAAFFX.13964.1.S1_AT similar to Lysosomal acid phosphatase precursor (LAP) cfa
CHICKEN:GGAAFFX.12976.1.S1_AT acid phosphatase 2, lysosomal gga
CHICKEN:GGAAFFX.5185.2.S1_S_AT acid phosphatase 2, lysosomal gga
HG-U133_PLUS_2:202767_AT acid phosphatase 2, lysosomal hs
HG-FOCUS:202767_AT acid phosphatase 2, lysosomal hs
HG-U133A:202767_AT acid phosphatase 2, lysosomal hs
HG-U133A_2:202767_AT acid phosphatase 2, lysosomal hs
HG-U95AV2:36651_AT acid phosphatase 2, lysosomal hs
HU35KSUBD:RC_N23970_S_AT acid phosphatase 2, lysosomal hs
HUGENEFL:X15525_RNA1_AT acid phosphatase 2, lysosomal hs
U133_X3P:G4557009_3P_AT acid phosphatase 2, lysosomal hs
HG-U95E:78387_AT Acid phosphatase 2, lysosomal hs
MG-U74AV2:92688_AT acid phosphatase 2, lysosomal mm
MU11KSUBB:MSA.2416.0_AT acid phosphatase 2, lysosomal mm
MG-U74BV2:109117_AT acid phosphatase 2, lysosomal mm
MOE430A:1424654_AT acid phosphatase 2, lysosomal mm
MOUSE430A_2:1424654_AT acid phosphatase 2, lysosomal mm
MOUSE430_2:1424654_AT acid phosphatase 2, lysosomal mm
MOE430A:1424655_AT acid phosphatase 2, lysosomal mm
MOUSE430A_2:1424655_AT acid phosphatase 2, lysosomal mm
MOUSE430_2:1424655_AT acid phosphatase 2, lysosomal mm
MG-U74BV2:109528_AT Acid phosphatase 2, lysosomal, mRNA (cDNA clone MGC:31030 IMAGE:5136781) mm
MU19KSUBC:TC37622_AT Acid phosphatase 2, lysosomal, mRNA (cDNA clone MGC:31030 IMAGE:5136781) mm
RG-U34A:RC_AI234950_AT acid phosphatase 2, lysosomal rn
RAE230A:1367906_AT acid phosphatase 2, lysosomal rn
RAT230_2:1367906_AT acid phosphatase 2, lysosomal rn
RAE230B:1382256_AT Acid phosphatase 2, lysosomal rn
RAT230_2:1382256_AT Acid phosphatase 2, lysosomal rn
RG-U34B:RC_AI011445_AT Acid phosphatase 2, lysosomal rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3993 acid phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18870 Hypothetical protein B0361.7 [Caenorhabditis elegans] ref|NP_498604.2| B0361.7 [Caenorhabditis elegans] sp|Q10944|PPAY_CAEEL Putative acid phosphatase B0361.7 precursor 0.0
blast D88504 protein B0361.7 [imported] - Caenorhabditis elegans 0.0
blast CAE69291 Hypothetical protein CBG15346 [Caenorhabditis briggsae] 1.0E-159
Protein Domains
Database ID Description E-Value
Pfam IPR000560 EMBL-EBI Histidine acid phosphatase 7.8E-24
Pfam IPR000560 EMBL-EBI Histidine acid phosphatase 3.4E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498604.2 1 371-393
B0361.7 1 371-393
GENEFINDER00000011059 1 371-393
Sequence
Target Sequence 
>C. ELEGANS:188107_AT
catacagatactcttcgacgtcttcgtggtgggacccttctcgaggaaatatttcatcga
tttagtgataaagcttctggatcactaggaaaagaagcaaagttttacgcgtattctgcg
cacgattcaacaatcgcagctcttctcgcgacacttggagtgttctacgatatttatcca
aaatatgcaacatgtttgctcatcgaaatgcacaaactcgcgaacgaaactcgcttgata
cgagtttttcataaaaatgagacagatattgatcggcttatcgaatattcgattcctggt
tgtgatgatccatgcacactccaaaagctcggagatgatcttaaaaaatactttccagag
gattgggaagccgaatgcggtctgaaaacaagcttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATACAGATACTCTTCGACGTCTTC 633 211 640 Antisense
GTGGGACCCTTCTCGAGGAAATATT 536 281 668 Antisense
AAGTTTTACGCGTATTCTGCGCACG 107 157 739 Antisense
GTATTCTGCGCACGATTCAACAATC 392 453 750 Antisense
TCAACAATCGCAGCTCTTCTCGCGA 662 629 766 Antisense
CTCTTCTCGCGACACTTGGAGTGTT 169 229 779 Antisense
GCAACATGTTTGCTCATCGAAATGC 631 317 826 Antisense
AACTCGCGAACGAAACTCGCTTGAT 635 141 854 Antisense
GATTCCTGGTTGTGATGATCCATGC 313 433 930 Antisense
TGATCCATGCACACTCCAAAAGCTC 703 565 945 Antisense
GAATGCGGTCTGAAAACAAGCTTCC 430 331 1012 Antisense
Sequence Source Affymetrix Proprietary Database