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[188106_at] lipase

Description T01C3.4 /REP_DB=WormBase Gene ID /WP=CE12914 /TR=Q22060 /GB=CAB01664.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=lipase
Cluster 6grp_total > 61      4grp_total > 62      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 290
1 2 3 4 range
A 319
(3)
P 		133.3
(-1.2)
A 		227.5
(0.9)
A 		51.7
(-3)
A 		267
B 303
(3)
P 		168.6
(0.1)
A 		236.7
(1.5)
M 		29.2
(-3)
A 		274
C 267.3
(3)
P 		125.1
(-2.5)
A 		215.4
(1)
A 		112.5
(-3)
A 		155
avr 296.4
(3) 		142.3
(-1) 		226.5
(1.2) 		64.5
(-3) 		232

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 806
1 2 3 4 5 6 range
A 186.5
(-3)
A 		340.2
(-1.7)
P 		682.4
(1.3)
P 		873.5
(3)
P 		347.9
(-1.6)
P 		233.9
(-2.6)
P 		687
B 185.8
(-2.8)
A 		351.7
(-0.6)
P 		440.9
(0.5)
P 		629
(3)
P 		299.8
(-1.3)
P 		171.9
(-3)
P 		457
C 213.4
(-3)
A 		348.8
(-1.9)
P 		977.8
(3)
P 		834.6
(1.9)
P 		305
(-2.3)
P 		221.6
(-2.9)
P 		764
avr 195.2
(-3) 		346.9
(-1.4) 		700.4
(2.2) 		779
(3) 		317.6
(-1.7) 		209.1
(-2.9) 		584
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 116.1
(3)
P 		28.9
(-1.8)
A 		59.5
(-0.1)
A 		7.6
(-3)
A 		109
B 96.6
(3)
P 		41.6
(-0.7)
A 		54.9
(0.2)
M 		6.2
(-3)
A 		90
C 88.5
(3)
P 		36
(-1.5)
A 		75.1
(1.8)
A 		19
(-3)
A 		70
avr 100.4
(3) 		35.5
(-1.4) 		63.2
(0.5) 		10.9
(-3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 215
1 2 3 4 5 6 range
A 34.4
(-3)
A 		121
(-0.2)
P 		148.6
(0.7)
P 		221.5
(3)
P 		105
(-0.7)
P 		56.9
(-2.3)
P 		187
B 64.7
(-3)
A 		117.1
(0.1)
P 		107.1
(-0.5)
P 		166.6
(3)
P 		121.8
(0.4)
P 		64.1
(-3)
P 		103
C 79.1
(-2.8)
A 		106.4
(-1.9)
P 		248.9
(3)
P 		167.8
(0.2)
P 		98.7
(-2.2)
P 		74.2
(-3)
P 		175
avr 59.4
(-3) 		114.8
(-0.4) 		168.2
(2.2) 		185.3
(3) 		108.5
(-0.7) 		65.1
(-2.7) 		126
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188106_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14162
Sequence Type Exemplar sequence
Representative Public ID T01C3.4 NCBI
Target Description T01C3.4 /REP_DB=WormBase Gene ID /WP=CE12914 /TR=Q22060 /GB=CAB01664.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=lipase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074287(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074287 NCBI Caenorhabditis elegans T01C3.4 (lipase) mRNA, complete cds. 11/11 None
SNAP00000022411 ENSEMBL cdna:SNAP chromosome:CEL140:V:14996517:14997639:1 11/11 None
GENEFINDER00000022425 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14996517:14997639:1 11/11 None
T01C3.4 ENSEMBL cdna:known chromosome:CEL140:V:14996517:14997639:1 gene:T01C3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14996516-14997639(+) 100.0 100.0
Public Domain and Genome References
Gene Title lipase
Ensembl T01C3.4
Entrez Gene 187940 Entrez gene
SwissProt Q22060 EMBL-EBI
WormBase CE12914 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16042 lipid catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16298 lipase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01664 Hypothetical protein T01C3.4 [Caenorhabditis elegans] ref|NP_506688.1| T01C3.4 [Caenorhabditis elegans] 0.0
blast CAE66341 Hypothetical protein CBG11593 [Caenorhabditis briggsae] 1.0E-170
blast CAE62401 Hypothetical protein CBG06488 [Caenorhabditis briggsae] 1.0E-155
Protein Domains
Database ID Description E-Value
Pfam IPR002918 EMBL-EBI Lipase, class 2 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:188106_AT
tagtcagacttcgcaagttcctcgaggcagtgctcgcctacacagctgctccaaagatct
cagttgtcactcacagtatgggagttacccttgccagaaagatcatcaagggtggatcag
tcagtgcatctgatggttcctgtgatttgggtcttccgttgaacaagaaggtcgaggtga
tgattggaatctctggtgccaactacggactttgcaattgtgagggtggaagtgcaacac
ttgaaaagacatgtaacagagtgaatggtctctggccaggagattcttgtggattgaact
acttggattgtggattgacacctcttccatggccatgcagtggtgtcaactattcctcat
tcttgatgcaactcaatgcagataagaataaggagggagactacgtattcagcatgtgga
gtctttccgatgatcttattgaatacggaacccaggtatggggacgttcaacatgtttca
ttccgacttctgatggaaaagtcgtctaccatgtctatacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGTCAGACTTCGCAAGTTCCTCGA 222 653 401 Antisense
AGATCTCAGTTGTCACTCACAGTAT 304 65 455 Antisense
GGGAGTTACCCTTGCCAGAAAGATC 638 495 480 Antisense
AGTGCATCTGATGGTTCCTGTGATT 87 61 523 Antisense
TCCTGTGATTTGGGTCTTCCGTTGA 666 593 538 Antisense
GAATCTCTGGTGCCAACTACGGACT 8 329 587 Antisense
GATTGTGGATTGACACCTCTTCCAT 444 435 706 Antisense
CCTCTTCCATGGCCATGCAGTGGTG 189 267 721 Antisense
TATTCCTCATTCTTGATGCAACTCA 115 665 751 Antisense
CAACATGTTTCATTCCGACTTCTGA 333 189 869 Antisense
AAAAGTCGTCTACCATGTCTATACC 166 133 897 Antisense
Sequence Source Affymetrix Proprietary Database