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[188105_s_at]

Description K07D8.1 /REP_DB=WormBase Gene ID /WP=CE25938 /GEN=mup-4 /TR=Q21281 /GB=AAA28092.3 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 24      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 57      6grp_total > 01      4grp_total > 59      6grp_highest_sub > 01_02      6grp_cgc > 43      6grp_high1_sub > 02      6grp_cgc_sub > 02      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2931
1 2 3 4 range
A 1683.1
(0.3)
P 		2373.4
(1.8)
P 		2900.7
(3)
P 		158
(-3)
P 		2743
B 1502.9
(0)
P 		2411.1
(2)
P 		2904.8
(3)
P 		79.6
(-3)
P 		2825
C 1619.5
(0.1)
P 		2400.4
(1.7)
P 		3010.4
(3)
P 		93.6
(-3)
P 		2917
avr 1601.8
(0.2) 		2395
(1.8) 		2938.6
(3) 		110.4
(-3) 		2828

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2116
1 2 3 4 5 6 range
A 2423
(-0.5)
P 		3659.1
(3)
P 		1543.2
(-3)
P 		2112.6
(-1.4)
P 		2145
(-1.3)
P 		2308.8
(-0.8)
P 		2116
B 2579.8
(0.9)
P 		3098.9
(3)
P 		1824.6
(-2.1)
P 		1606.8
(-3)
P 		1915.5
(-1.8)
P 		1968.9
(-1.5)
P 		1492
C 2895.2
(2.3)
P 		3055.8
(3)
P 		2380.5
(0.1)
P 		1643.6
(-3)
P 		2838.1
(2.1)
P 		1919.5
(-1.8)
P 		1412
avr 2632.7
(0.4) 		3271.3
(3) 		1916.1
(-2.5) 		1787.7
(-3) 		2299.5
(-0.9) 		2065.7
(-1.9) 		1484
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1033
1 2 3 4 range
A 612.8
(1.8)
P 		515.2
(1)
P 		758.3
(3)
P 		23.1
(-3)
P 		735
B 479.3
(1.2)
P 		595.5
(2.3)
P 		673.1
(3)
P 		17
(-3)
P 		656
C 536.1
(0)
P 		690.1
(0.9)
P 		1049.2
(3)
P 		15.8
(-3)
P 		1033
avr 542.7
(0.9) 		600.3
(1.3) 		826.9
(3) 		18.6
(-3) 		808

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 971
1 2 3 4 5 6 range
A 446.7
(-2.3)
P 		1301.4
(3)
P 		336.1
(-3)
P 		535.8
(-1.8)
P 		647.3
(-1.1)
P 		562.1
(-1.6)
P 		965
B 897.6
(1.7)
P 		1031.5
(3)
P 		443.1
(-2.8)
P 		425.6
(-3)
P 		778.2
(0.5)
P 		734.2
(0.1)
P 		606
C 1073.1
(3)
P 		932.4
(1.9)
P 		605.9
(-0.8)
P 		330.5
(-3)
P 		918.4
(1.8)
P 		642.6
(-0.5)
P 		743
avr 805.8
(0.4) 		1088.4
(3) 		461.7
(-2.7) 		430.6
(-3) 		781.3
(0.2) 		646.3
(-1) 		658
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188105_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7179
Sequence Type Exemplar sequence
Representative Public ID K07D8.1 NCBI
Target Description K07D8.1 /REP_DB=WormBase Gene ID /WP=CE25938 /GEN=mup-4 /TR=Q21281 /GB=AAA28092.3 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066244(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066244 NCBI Caenorhabditis elegans MUscle Positioning family member (mup-4) (mup-4) mRNA, complete cds. 11/11 A 
K07D8.1.3 ENSEMBL cdna:known chromosome:CEL140:III:7479525:7488982:-1 gene:K07D8.1 11/11 None
K07D8.1.1 ENSEMBL cdna:known chromosome:CEL140:III:7479601:7488982:-1 gene:K07D8.1 11/11 A 
K07D8.1.2 ENSEMBL cdna:known chromosome:CEL140:III:7479604:7488995:-1 gene:K07D8.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7479991-7488980(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol mup-4
Ensembl K07D8.1
Entrez Gene 176060 Entrez gene
SwissProt Q21281 EMBL-EBI
WormBase CE29511 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA28092 Muscle positioning protein 4 [Caenorhabditis elegans] ref|NP_498645.1| MUscle Positioning family member (mup-4) [Caenorhabditis elegans] 0.0
blast AAK69172 transmembrane matrix receptor MUP-4 [Caenorhabditis elegans] 0.0
blast CAE64462 Hypothetical protein CBG09178 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 3.4E-63
Pfam IPR006209 EMBL-EBI EGF-like domain 4.8E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 1.1E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.5E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 2.3E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 3.3E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.9E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 1.9E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 1.4E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 3.6E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 1.6E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 3.3E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 2.3E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 6.7E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 2.9E-6
Pfam IPR000082 EMBL-EBI SEA domain 1.7E-4
Pfam IPR000082 EMBL-EBI SEA domain 2.0E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498645.1 1 1862-1884
K07D8.1.3 1 1862-1884
K07D8.1.1 1 1862-1884
K07D8.1.2 1 1862-1884
Sequence
Target Sequence 
>C. ELEGANS:188105_S_AT
ggatccgattactacacgataccacgtgctaaactagccagaccactttatggagatgag
atgggagatgatcatgcaggagcactcgctgcttatttggatgatggagcatctatttca
tctgatggaagtatcgaagagattgaaagaagagtcacaactgatgttacaactagagaa
gtcagaactacaactgttagagatgatgatggaaatattatcagtcagagtcagacaatc
tcccatggaaacccccatgagacagacactgagcaatatggaatgatatcttctgatcat
tacaagacatctgcctcagaggcaatggatgctgccatgtctacgtccgcctccggagcc
gcttacaatcaaagctccggtgcaatgatgagctctgcatctggacataaatctgcatat
aatcaaggatatgcatcagattctgaagactctgatgctggacatgcagtttatgataga
actacaaggacgaatcagtcacacgatttcgagccaggagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCCGATTACTACACGATACCAC 458 513 5749 Antisense
GTGCTAAACTAGCCAGACCACTTTA 708 479 5774 Antisense
GATGATCATGCAGGAGCACTCGCTG 73 411 5815 Antisense
GCACTCGCTGCTTATTTGGATGATG 645 315 5830 Antisense
GTCAGAGTCAGACAATCTCCCATGG 312 467 5972 Antisense
ATCTCCCATGGAAACCCCCATGAGA 454 33 5986 Antisense
GATCATTACAAGACATCTGCCTCAG 554 419 6043 Antisense
AATGGATGCTGCCATGTCTACGTCC 362 163 6072 Antisense
GAGCCGCTTACAATCAAAGCTCCGG 24 387 6104 Antisense
GAGCTCTGCATCTGGACATAAATCT 450 387 6138 Antisense
GTCACACGATTTCGAGCCAGGAGCA 237 465 6246 Antisense
Sequence Source Affymetrix Proprietary Database