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[188104_s_at]

Description F25H8.5B /REP_DB=WormBase Gene ID /WP=CE20723 /GEN=dur-1 /TR=Q19790 /GB=CAA93286.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 11      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 21      6grp_total > 23      4grp_total > 59      6grp_highest_sub > De      6grp_cgc > 60      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1537
1 2 3 4 range
A 1145.4
(1.3)
P 		1485.8
(2.8)
P 		1537.2
(3)
P 		186.5
(-3)
P 		1351
B 1172.9
(1.1)
P 		1381.5
(1.9)
P 		1655.3
(3)
P 		161.8
(-3)
P 		1494
C 1144.5
(0.8)
P 		1699.2
(3)
P 		1446.6
(2)
P 		162.6
(-3)
P 		1537
avr 1154.3
(1.3) 		1522.2
(2.9) 		1546.4
(3) 		170.3
(-3) 		1376

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1703
1 2 3 4 5 6 range
A 1475.6
(3)
P 		1465
(2.9)
P 		951.2
(-0.5)
P 		1222.3
(1.3)
P 		875.2
(-1)
P 		566.9
(-3)
P 		909
B 1253.4
(2.5)
P 		1310.5
(2.9)
P 		1330.6
(3)
P 		1231.3
(2.3)
P 		881.5
(-0.1)
P 		464.4
(-3)
P 		866
C 2128.4
(3)
P 		1234.8
(-0.1)
P 		1590
(1.1)
P 		1038.8
(-0.8)
P 		1110.2
(-0.6)
P 		425.8
(-3)
P 		1703
avr 1619.1
(3) 		1336.8
(1.5) 		1290.6
(1.3) 		1164.1
(0.6) 		955.6
(-0.5) 		485.7
(-3) 		1133
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 477
1 2 3 4 range
A 417
(3)
P 		322.5
(1.5)
P 		401.9
(2.8)
P 		27.3
(-3)
P 		390
B 374
(2.8)
P 		341.2
(2.3)
P 		383.6
(3)
P 		34.5
(-3)
P 		349
C 378.9
(1.4)
P 		488.5
(2.8)
P 		504.2
(3)
P 		27.4
(-3)
P 		477
avr 390
(2.4) 		384.1
(2.3) 		429.9
(3) 		29.7
(-3) 		400

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 651
1 2 3 4 5 6 range
A 272
(-0.9)
P 		521
(3)
P 		207.2
(-1.9)
P 		310
(-0.3)
P 		264.1
(-1)
P 		138
(-3)
P 		383
B 436.1
(3)
P 		436.2
(3)
P 		323.1
(0.4)
P 		326.1
(0.5)
P 		358.2
(1.2)
P 		173.2
(-3)
P 		263
C 788.9
(3)
P 		376.8
(-0.8)
P 		404.7
(-0.6)
P 		208.9
(-2.4)
P 		359.3
(-1)
P 		142.5
(-3)
P 		646
avr 499
(3) 		444.7
(2.1) 		311.7
(-0.2) 		281.7
(-0.7) 		327.2
(0) 		151.2
(-3) 		348
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188104_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9391
Sequence Type Exemplar sequence
Representative Public ID F25H8.5B NCBI
Target Description F25H8.5B /REP_DB=WormBase Gene ID /WP=CE20723 /GEN=dur-1 /TR=Q19790 /GB=CAA93286.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069385(11), NM_069386(11), NM_069387(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069385 NCBI Caenorhabditis elegans Dauer Up-Regulated family member (dur-1) (dur-1) mRNA, complete cds. 11/11 A 
NM_069386 NCBI Caenorhabditis elegans Dauer Up-Regulated family member (dur-1) (dur-1) mRNA, complete cds. 11/11 A 
NM_069387 NCBI Caenorhabditis elegans Dauer Up-Regulated family member (dur-1) (dur-1) mRNA, complete cds. 11/11 None
SNAP00000013889 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9923950:9928194:-1 11/11 None
GENEFINDER00000013893 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9922023:9928194:-1 11/11 None
F25H8.5a ENSEMBL cdna:known chromosome:CEL140:IV:9921977:9928194:-1 gene:F25H8.5 11/11 A 
F25H8.5c ENSEMBL cdna:known chromosome:CEL140:IV:9922218:9928194:-1 gene:F25H8.5 11/11 A 
F25H8.5b ENSEMBL cdna:known chromosome:CEL140:IV:9924878:9928197:-1 gene:F25H8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177846 4 3 NM_001027974 174446_s_at (11), 188100_s_at (11)
NM_069385 174446_s_at (11), 188100_s_at (11), 188104_s_at (11)
NM_069386 188100_s_at (11), 188104_s_at (11)
NM_069387 188104_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9925104-9928200(-) 100.0 100.0
Public Domain and Genome References
Ensembl F25H8.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93285 Hypothetical protein F25H8.5a [Caenorhabditis elegans] ref|NP_501786.2| Dauer Up-Regulated family member (dur-1) [Caenorhabditis elegans] 0.0
blast CAC42291 Hypothetical protein F25H8.5c [Caenorhabditis elegans] ref|NP_501787.2| Dauer Up-Regulated family member (dur-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 4.4E-13
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 4.4E-13
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 4.4E-13
Sequence
Target Sequence 
>C. ELEGANS:188104_S_AT
cctgaacctccacgtcaaacgggaggatgccttccaggaccatattactcaccaaacaca
atggccccaccccaacaccaacaaccatatcccgaaagaaacggtggtggttgccgtcaa
agatcccctcagccccagtacccaagaaccaatgagttccgtgcccctgttgtggaatgc
catggaaatggaccagctccgtgcaatccacaaccacagcaagaggatccatgcgtcgga
aaagtgaatatcgtttcagttgacgctgctgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTGAACCTCCACGTCAAACGGGAG 56 265 595 Antisense
CAAACGGGAGGATGCCTTCCAGGAC 630 183 610 Antisense
CTTCCAGGACCATATTACTCACCAA 84 219 625 Antisense
TTACTCACCAAACACAATGGCCCCA 97 665 639 Antisense
CACCAACAACCATATCCCGAAAGAA 536 201 670 Antisense
CGGTGGTGGTTGCCGTCAAAGATCC 493 241 696 Antisense
CAAGAACCAATGAGTTCCGTGCCCC 330 183 737 Antisense
TGCCCCTGTTGTGGAATGCCATGGA 389 585 756 Antisense
ATGGAAATGGACCAGCTCCGTGCAA 173 53 776 Antisense
ACAGCAAGAGGATCCATGCGTCGGA 329 109 810 Antisense
ATATCGTTTCAGTTGACGCTGCTGG 162 21 842 Antisense
Sequence Source Affymetrix Proprietary Database