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[188102_s_at]

Description C32E8.8 /REP_DB=WormBase Gene ID /WP=CE08532 /GEN=ptr-2 /TR=P91129 /GB=AAB42325.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 99      4grp_high_8_8 > 46      6grp_highest_nonorm > 94      6grp_total > 95      4grp_total > 57      6grp_highest_sub > In      6grp_cgc > 78      6grp_cgc_sub > In      6grp_total_sub > Increase      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 804
1 2 3 4 range
A 125.7
(-2.6)
P 		879.9
(3)
P 		820.6
(2.6)
P 		75.6
(-3)
A 		804
B 89
(-3)
P 		590
(1.2)
P 		799.3
(3)
P 		103.1
(-2.9)
A 		710
C 96.2
(-3)
A 		646.4
(2.2)
P 		728.8
(3)
P 		145.9
(-2.5)
P 		633
avr 103.6
(-3) 		705.4
(2.3) 		782.9
(3) 		108.2
(-3) 		679

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 810
1 2 3 4 5 6 range
A 193.7
(-3)
P 		482.1
(-0.7)
P 		276.4
(-2.3)
P 		445.5
(-1)
P 		941.7
(3)
P 		889.4
(2.6)
P 		748
B 177.8
(-3)
P 		462.6
(-0.9)
P 		364.6
(-1.6)
P 		589.4
(0.1)
P 		895.1
(2.4)
P 		979.1
(3)
P 		801
C 169.5
(-3)
P 		422.8
(-0.8)
P 		362.6
(-1.3)
P 		500.5
(-0.1)
P 		857.8
(3)
P 		801.8
(2.5)
P 		688
avr 180.3
(-3) 		455.8
(-0.7) 		334.5
(-1.7) 		511.8
(-0.2) 		898.2
(3) 		890.1
(2.9) 		718
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 243
1 2 3 4 range
A 45.8
(-2)
P 		191
(2.3)
P 		214.5
(3)
P 		11.1
(-3)
A 		203
B 28.4
(-2.8)
P 		145.7
(1.5)
P 		185.2
(3)
P 		22
(-3)
A 		163
C 31.9
(-2.8)
A 		185.8
(1.2)
P 		254
(3)
P 		24.6
(-3)
P 		229
avr 35.4
(-2.5) 		174.2
(1.7) 		217.9
(3) 		19.2
(-3) 		199

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 329
1 2 3 4 5 6 range
A 35.7
(-3)
P 		171.5
(0.3)
P 		60.2
(-2.4)
P 		113
(-1.1)
P 		284.2
(3)
P 		216.6
(1.4)
P 		249
B 61.9
(-3)
P 		154
(-1.2)
P 		88.5
(-2.5)
P 		156.1
(-1.1)
P 		363.7
(3)
P 		365.1
(3)
P 		303
C 62.8
(-3)
P 		129
(-1.2)
P 		92.3
(-2.2)
P 		100.7
(-1.9)
P 		277.6
(3)
P 		268.4
(2.7)
P 		215
avr 53.5
(-3) 		151.5
(-0.7) 		80.3
(-2.4) 		123.3
(-1.4) 		308.5
(3) 		283.4
(2.4) 		255
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188102_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.126
Sequence Type Exemplar sequence
Representative Public ID C32E8.8 NCBI
Target Description C32E8.8 /REP_DB=WormBase Gene ID /WP=CE08532 /GEN=ptr-2 /TR=P91129 /GB=AAB42325.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058820(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058820 NCBI Caenorhabditis elegans PaTched Related family member (ptr-2) (ptr-2) mRNA, complete cds. 11/11 A 
GENEFINDER00000040662 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3789416:3792797:-1 11/11 None
C32E8.8 ENSEMBL cdna:known chromosome:CEL140:I:3789321:3792799:-1 gene:C32E8.8 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040653 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3789415-3792797(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ptr-2
Ensembl C32E8.8
Entrez Gene 171950 Entrez gene
SwissProt P91129 EMBL-EBI
WormBase CE08532 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1636728_AT Ptc-related dm
DROSGENOME1:146674_AT Ptc-related dm
CHICKEN:GGAAFFX.4657.1.S1_S_AT similar to CG11212-PA gga
MOE430B:1431518_AT patched domain containing 3 mm
MOUSE430_2:1431518_AT patched domain containing 3 mm
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8158 hedgehog receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB42325 Patched related family protein 2 [Caenorhabditis elegans] ref|NP_491221.1| PaTched Related family member (ptr-2) [Caenorhabditis elegans] 0.0
blast CAE66666 Hypothetical protein CBG12004 [Caenorhabditis briggsae] 0.0
blast CAE68940 Hypothetical protein CBG14920 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003392 EMBL-EBI Patched family 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491221.1 12 17-39,265-287,300-322,332-354,375-397,407-429,490-512,701-723,730-752,762-784,797-819,834-856
C32E8.8 12 17-39,265-287,300-322,332-354,375-397,407-429,490-512,701-723,730-752,762-784,797-819,834-856
GENEFINDER00000040662 12 17-39,265-287,300-322,332-354,375-397,407-429,490-512,701-723,730-752,762-784,797-819,834-856
Sequence
Target Sequence 
>C. ELEGANS:188102_S_AT
catgtcaattgggttctccgtcgattattctgcacacattgcatatggctatgtcgtatc
cagagaagatacagcagctggtagagtgaaagaagcactatcagctcttggatggccact
gtctcagggagctatgtctacaattatcgcggtttcagttcttgccgatattccagcata
tatgatagttacttttttcaaaacggtcgttctctcaatttctctcggtcttctccatgg
tcttgttttccttccagtattgctctcaatattcgtacgtggatgttgcataatccctag
ctcaccgcatggtcatcccagcgctcaaaaaatcgaaaagcaaatcaggatcgccgctat
ctcgtctagtccactcgatttgcgaaccgttgctccgctccgcgcctcgtcaccaatcag
cttcccgcataggcttgagtacaccgatgaatctccaactgtacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATGTCAATTGGGTTCTCCGTCGAT 671 209 2307 Antisense
CCGTCGATTATTCTGCACACATTGC 414 265 2324 Antisense
AGCACTATCAGCTCTTGGATGGCCA 222 77 2400 Antisense
GGCCACTGTCTCAGGGAGCTATGTC 568 543 2420 Antisense
TTTCAGTTCTTGCCGATATTCCAGC 133 671 2459 Antisense
ATTGCTCTCAATATTCGTACGTGGA 467 5 2565 Antisense
GGATGTTGCATAATCCCTAGCTCAC 369 513 2587 Antisense
AGCAAATCAGGATCGCCGCTATCTC 357 77 2645 Antisense
TAGTCCACTCGATTTGCGAACCGTT 135 655 2673 Antisense
GCTTCCCGCATAGGCTTGAGTACAC 275 307 2726 Antisense
CACCGATGAATCTCCAACTGTACAC 532 199 2748 Antisense
Sequence Source Affymetrix Proprietary Database