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[188099_s_at]

Description C08D8.2 /REP_DB=WormBase Gene ID /WP=CE27058 /GEN=tmd-2 /TR=Q17823 /GB=AAK39158.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 56      6grp_high1_10_10 > 54      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 90      6grp_total > 55      4grp_total > 12      6grp_cgc > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 264
1 2 3 4 range
A 209.9
(-0.6)
P 		211.4
(-0.5)
P 		126.6
(-3)
P 		333.4
(3)
P 		207
B 245.4
(-0.6)
P 		177.9
(-2.8)
P 		173.1
(-3)
P 		356.7
(3)
P 		184
C 215.6
(-1.2)
P 		141.2
(-3)
P 		160.4
(-2.5)
P 		391
(3)
P 		250
avr 223.6
(-1) 		176.8
(-2.3) 		153.4
(-3) 		360.4
(3) 		207

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 127
(-3)
P 		175.6
(0.1)
P 		220.9
(3)
P 		186.5
(0.8)
P 		144.7
(-1.9)
P 		147.1
(-1.7)
P 		94
B 125.3
(-3)
P 		202.5
(1.3)
P 		181.7
(0.1)
P 		169.2
(-0.6)
P 		138.2
(-2.3)
P 		233.7
(3)
P 		108
C 127.9
(-2.1)
P 		202.6
(2.2)
P 		173.9
(0.6)
P 		111.8
(-3)
P 		159
(-0.3)
P 		216.2
(3)
P 		104
avr 126.7
(-3) 		193.6
(2.6) 		192.2
(2.4) 		155.8
(-0.6) 		147.3
(-1.3) 		199
(3) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 76.4
(3)
P 		45.9
(-1.2)
P 		33.1
(-3)
P 		48.8
(-0.8)
P 		43
B 78.3
(3)
P 		43.9
(-2.4)
P 		40.1
(-3)
P 		76
(2.6)
P 		38
C 71.4
(3)
P 		40.6
(-3)
P 		55.9
(-0)
P 		65.9
(1.9)
P 		31
avr 75.4
(3) 		43.5
(-2.9) 		43
(-3) 		63.6
(0.8) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 23.4
(-3)
P 		62.5
(3)
P 		48.1
(0.8)
P 		47.3
(0.7)
P 		43.7
(0.1)
P 		35.8
(-1.1)
P 		39
B 43.6
(-3)
P 		67.4
(0.3)
P 		44.1
(-2.9)
P 		44.8
(-2.8)
P 		56.1
(-1.3)
P 		87.2
(3)
P 		44
C 47.4
(-0)
P 		61.8
(1.7)
P 		44.3
(-0.4)
P 		22.5
(-3)
P 		51.4
(0.5)
P 		72.4
(3)
P 		50
avr 38.1
(-3) 		63.9
(2.7) 		45.5
(-1.4) 		38.2
(-3) 		50.4
(-0.3) 		65.1
(3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188099_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12202
Sequence Type Exemplar sequence
Representative Public ID C08D8.2 NCBI
Target Description C08D8.2 /REP_DB=WormBase Gene ID /WP=CE27058 /GEN=tmd-2 /TR=Q17823 /GB=AAK39158.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182343(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182343 NCBI Caenorhabditis elegans TropoMoDulin family member (tmd-2) (tmd-2) mRNA, complete cds. 11/11 None
SNAP00000018221 ENSEMBL cdna:SNAP chromosome:CEL140:V:8340081:8342664:1 11/11 None
GENEFINDER00000018222 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8339248:8342664:1 11/11 None
C08D8.2b ENSEMBL cdna:known chromosome:CEL140:V:8339248:8343265:1 gene:C08D8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179216 2 1 NM_182343 188099_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8340081-8342665(+) 100.0 100.0
Public Domain and Genome References
Ensembl C08D8.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAQ23121 Tropomodulin protein 2, isoform b [Caenorhabditis elegans] ref|NP_872143.2| TropoMoDulin family member (tmd-2) [Caenorhabditis elegans] 0.0
blast AAQ23120 Tropomodulin protein 2, isoform a [Caenorhabditis elegans] ref|NP_505151.2| TropoMoDulin family member (tmd-2) [Caenorhabditis elegans] 1.0E-146
blast AAQ23120 Tropomodulin protein 2, isoform a [Caenorhabditis elegans] ref|NP_505151.2| TropoMoDulin family member (tmd-2) [Caenorhabditis elegans] 1.0E-144
blast CAE66072 Hypothetical protein CBG11286 [Caenorhabditis briggsae] 1.0E-132
Protein Domains
Database ID Description E-Value
Pfam IPR004934 EMBL-EBI Tropomodulin 8.9E-46
Pfam IPR004934 EMBL-EBI Tropomodulin 8.9E-46
Sequence
Target Sequence 
>C. ELEGANS:188099_S_AT
atgctccaattcttgatgtttccgggaatgctgctccatcaactgcaaagccaaaacttg
acggagcacctatacgtgctaaacgacctcctatcactgctaaaaatatttgggagcaac
gaatggcaaagattgagaagaaagaggaaaagaagaagccgttactttctattcaaaaaa
ttagagaaatggagaaaaatgatgtgatcaaaaaagaagaggacgatcgattggagcaac
ttttgaaaaaagaaaaagaaccaaaaaagctaaacaatgagcacagaaagctatttgaaa
atggaaatgttgcacagaagaagccggaaccaagacggcatgttcagaagctcattgcaa
agaaaccaaactcaattctgaatcaaacagaacccacaaaaatagagggaccggataagc
aagaaacccgaccaactacagtaatccggcgtactgtaatacgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTCCAATTCTTGATGTTTCCGG 175 43 1448 Antisense
TGATGTTTCCGGGAATGCTGCTCCA 280 567 1461 Antisense
AGCCAAAACTTGACGGAGCACCTAT 382 83 1496 Antisense
ACCTATACGTGCTAAACGACCTCCT 270 87 1515 Antisense
CGACCTCCTATCACTGCTAAAAATA 363 251 1531 Antisense
GAAGAAGCCGTTACTTTCTATTCAA 113 341 1599 Antisense
GAGGACGATCGATTGGAGCAACTTT 52 405 1666 Antisense
GTTGCACAGAAGAAGCCGGAACCAA 78 439 1756 Antisense
GACGGCATGTTCAGAAGCTCATTGC 12 377 1781 Antisense
TAAGCAAGAAACCCGACCAACTACA 107 637 1863 Antisense
GTAATCCGGCGTACTGTAATACGAA 55 463 1888 Antisense
Sequence Source Affymetrix Proprietary Database