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[188098_s_at]

Description W09B6.2 /REP_DB=WormBase Gene ID /WP=CE27222 /GEN=taf-3 /TR=Q9GZI6 /GB=AAG00033.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 89      6grp_total > 98      4grp_total > 62      6grp_cgc > 69      6grp_high1_sub > Cu      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 267.9
(3)
P 		187.9
(0.2)
P 		269.1
(3)
P 		93.9
(-3)
A 		175
B 302.5
(3)
P 		237
(1.1)
M 		150.1
(-1.4)
A 		93.8
(-3)
A 		209
C 250.8
(2.8)
P 		131.5
(-2.9)
A 		254.9
(3)
P 		129.8
(-3)
A 		125
avr 273.7
(3) 		185.5
(-0.2) 		224.7
(1.2) 		105.8
(-3) 		168

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 385
1 2 3 4 5 6 range
A 168.5
(-1.7)
M 		204.3
(-1)
P 		105.3
(-3)
A 		228.4
(-0.5)
P 		236.3
(-0.3)
P 		398.2
(3)
P 		293
B 192.3
(-1)
A 		92.8
(-3)
A 		142.4
(-2)
A 		156.3
(-1.7)
P 		365.3
(2.6)
P 		386.9
(3)
P 		294
C 225.8
(-1.1)
P 		109
(-3)
A 		197.4
(-1.6)
P 		108.4
(-3)
A 		444.7
(2.5)
P 		477.8
(3)
P 		369
avr 195.5
(-1.7) 		135.4
(-3) 		148.4
(-2.7) 		164.4
(-2.4) 		348.8
(1.5) 		421
(3) 		286
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 97.5
(3)
P 		40.8
(-1.1)
P 		70.3
(1.1)
P 		13.7
(-3)
A 		84
B 96.5
(3)
P 		58.5
(0)
M 		34.8
(-1.8)
A 		20
(-3)
A 		77
C 83
(2.5)
P 		37.8
(-1.6)
A 		88.8
(3)
P 		21.9
(-3)
A 		67
avr 92.3
(3) 		45.7
(-0.8) 		64.6
(0.7) 		18.5
(-3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 31.1
(-2.3)
M 		72.6
(1)
P 		22.9
(-3)
A 		57.9
(-0.2)
P 		71.3
(0.9)
P 		97
(3)
P 		74
B 66.9
(-1.2)
A 		30.9
(-3)
A 		34.6
(-2.8)
A 		41.4
(-2.5)
P 		148.4
(3)
P 		144.3
(2.8)
P 		118
C 83.7
(-0.3)
P 		33.2
(-2.5)
A 		50.2
(-1.8)
P 		21.8
(-3)
A 		143.9
(2.3)
P 		159.9
(3)
P 		138
avr 60.6
(-1.5) 		45.6
(-2.4) 		35.9
(-3) 		40.4
(-2.7) 		121.2
(2.2) 		133.7
(3) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188098_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5666
Sequence Type Exemplar sequence
Representative Public ID W09B6.2 NCBI
Target Description W09B6.2 /REP_DB=WormBase Gene ID /WP=CE27222 /GEN=taf-3 /TR=Q9GZI6 /GB=AAG00033.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061518(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061518 NCBI Caenorhabditis elegans TAF (TBP-associated transcription factor) family member (taf-6.1) (taf-6.1) mRNA, complete cds. 11/11 None
GENEFINDER00000001938 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1127998:1132309:1 11/11 None
W09B6.2.2 ENSEMBL cdna:known chromosome:CEL140:II:1127980:1132353:1 gene:W09B6.2 11/11 None
W09B6.2.1 ENSEMBL cdna:known chromosome:CEL140:II:1127982:1132353:1 gene:W09B6.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001934 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1126895-1132308(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol taf-6.1
Ensembl W09B6.2
Entrez Gene 173498 Entrez gene
SwissProt Q9GZI6 EMBL-EBI
WormBase CE27222 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:261126_AT TATA box-binding protein-associated factor (TAF) family protein at
ATGENOME1:20445_AT TATA box-binding protein-associated factor (TAF) family protein at
CANINE_2:CFA.21447.1.S1_S_AT similar to Transcription initiation factor TFIID subunit 6 (Transcription initiation factor TFIID 70 kDa subunit) (TAF(II)70) (TAFII-70) (TAFII-80) (TAFII80) (p80) cfa
CANINE_2:CFAAFFX.22602.1.S1_AT similar to Transcription initiation factor TFIID subunit 6 (Transcription initiation factor TFIID 70 kDa subunit) (TAF(II)70) (TAFII-70) (TAFII-80) (TAFII80) (p80) cfa
DROSOPHILA_2:1626563_AT TBP-associated factor 6 dm
DROSGENOME1:154267_AT TBP-associated factor 6 dm
HG-U95AV2:37271_AT TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa hs
HU35KSUBD:RC_N67935_AT TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa hs
HU35KSUBD:RC_AA456083_S_AT TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa hs
HUGENEFL:L25444_AT TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa hs
HG-U133A:203572_S_AT TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa hs
HG-U133_PLUS_2:203572_S_AT TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa hs
HG-FOCUS:203572_S_AT TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa hs
HG-U133A_2:203572_S_AT TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa hs
U133_X3P:G5032146_3P_A_AT TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa hs
MG-U74AV2:103591_AT TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor mm
MU11KSUBA:D49439_S_AT TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor mm
MOE430A:1418593_AT TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor mm
MOUSE430A_2:1418593_AT TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor mm
MOUSE430_2:1418593_AT TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor mm
RG-U34A:U70270UTR#1_F_AT TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor (predicted) rn
RG-U34A:D49446_AT TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor (predicted) rn
RG-U34B:RC_AI008793_S_AT TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor (predicted) rn
RG-U34B:RC_AA957789_S_AT TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor (predicted) rn
RAE230A:1389174_S_AT TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor (predicted) rn
RAT230_2:1389174_S_AT TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor (predicted) rn
RAE230A:1388058_AT TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor (predicted) rn
RAT230_2:1388058_AT TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor (predicted) rn
YEAST_2:1774100_AT Subunit (60 kDa) of TFIID and SAGA complexes, involved in transcription initiation of RNA polymerase II and in chromatin modification, similar to histone H4 Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6352 transcription initiation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16986 transcription initiation factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG00033 Taf (tbp-associated transcription factor) family protein 6.1 [Caenorhabditis elegans] ref|NP_493919.1| TAF (TBP-associated transcription factor) family member (taf-6.1) [Caenorhabditis elegans] 0.0
blast T32410 hypothetical protein W09B6.2 - Caenorhabditis elegans 0.0
blast CAE62904 Hypothetical protein CBG07094 [Caenorhabditis briggsae] 1.0E-160
blast CAE62904 Hypothetical protein CBG07094 [Caenorhabditis briggsae] 1.0E-159
Protein Domains
Database ID Description E-Value
Pfam IPR004823 EMBL-EBI TATA box binding protein associated factor (TAF) 2.5E-9
Pfam IPR004823 EMBL-EBI TATA box binding protein associated factor (TAF) 4.6E-13
Pfam IPR004823 EMBL-EBI TATA box binding protein associated factor (TAF) 1.1E-29
Sequence
Target Sequence 
>C. ELEGANS:188098_S_AT
ctaccgcacctaaccgaacgaatatgcaaatcaatctcggctaacatctcacaacgctgt
ctatcacttattatctatgccggacgtgttttacggtccctaagccacaataaggcctgt
gacatgactgttacgcttcatcacgtgctcccagccctcctaagctgctgtgtcggccgg
aatatgtgtctgcgaccggaaaccgacaatcactgggcgctaagggatttttcggcgaaa
acgctcgtcggattggttcgagaccaagtggacaaacacgacgccggccgtaccgcccgt
cgccttttcgatttttcgcatcgaatttttcgcgacacgggctcctcgttctcgatgatc
tacggaaccgtccatatccttcaggaattcgtggcgggacccaaaaaagccgcttggctg
ctcacggagctcggcgagacgaatgcgcggtgcaaatcgcacatcgagtcgggctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTACCGCACCTAACCGAACGAATAT 82 203 1105 Antisense
CAATCTCGGCTAACATCTCACAACG 387 179 1136 Antisense
ACAACGCTGTCTATCACTTATTATC 437 113 1155 Antisense
GTGTCGGCCGGAATATGTGTCTGCG 512 487 1274 Antisense
CGGAAACCGACAATCACTGGGCGCT 164 243 1301 Antisense
GCGAAAACGCTCGTCGGATTGGTTC 498 289 1339 Antisense
ATCGAATTTTTCGCGACACGGGCTC 198 33 1424 Antisense
CTCCTCGTTCTCGATGATCTACGGA 642 233 1446 Antisense
GAACCGTCCATATCCTTCAGGAATT 181 347 1469 Antisense
GAGCTCGGCGAGACGAATGCGCGGT 600 387 1531 Antisense
GCAAATCGCACATCGAGTCGGGCTC 532 317 1556 Antisense
Sequence Source Affymetrix Proprietary Database