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[188097_at] CDC20

Description ZK177.6 /REP_DB=WormBase Gene ID /WP=CE26338 /TR=Q09661 /GB=AAG00051.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=CDC20
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 77      4grp_highest_8_8 > 01      4grp_high_8_8 > 53      6grp_highest_nonorm > 93      6grp_total > 78      4grp_total > 58      6grp_highest_sub > Da      6grp_cgc > 49      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 172
1 2 3 4 range
A 185.2
(-1)
P 		290.8
(3)
P 		243.9
(1.2)
P 		132.3
(-3)
P 		159
B 214.3
(-0.5)
P 		269.7
(3)
P 		251.5
(1.8)
P 		174.9
(-3)
P 		95
C 224.9
(-1.1)
P 		300
(2.8)
P 		304.2
(3)
P 		187.1
(-3)
P 		117
avr 208.1
(-0.9) 		286.8
(3) 		266.5
(2) 		164.8
(-3) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 822
1 2 3 4 5 6 range
A 275.7
(-2.2)
P 		208
(-2.9)
P 		193.5
(-3)
P 		207.3
(-2.9)
P 		374.7
(-1.3)
P 		816.1
(3)
P 		623
B 294.6
(-2)
P 		224
(-2.6)
P 		166.8
(-3)
P 		271.9
(-2.2)
P 		410
(-1.2)
P 		968.9
(3)
P 		802
C 218.8
(-2.8)
P 		262.6
(-2.5)
P 		229.4
(-2.7)
P 		192.1
(-3)
P 		405.8
(-1.4)
P 		988.4
(3)
P 		796
avr 263
(-2.5) 		231.5
(-2.7) 		196.6
(-3) 		223.8
(-2.8) 		396.8
(-1.3) 		924.5
(3) 		728
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 67.4
(3)
P 		63.1
(2.5)
P 		63.8
(2.6)
P 		19.4
(-3)
P 		48
B 68.3
(3)
P 		66.6
(2.7)
P 		58.3
(1.1)
P 		37.3
(-3)
P 		31
C 74.4
(0.5)
P 		86.2
(1.4)
P 		106
(3)
P 		31.5
(-3)
P 		75
avr 70
(2.2) 		72
(2.5) 		76
(3) 		29.4
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 323
1 2 3 4 5 6 range
A 50.8
(-2.7)
P 		74
(-1.8)
P 		42.1
(-3)
P 		52.6
(-2.6)
P 		113.1
(-0.3)
P 		198.7
(3)
P 		157
B 102.5
(-1.8)
P 		74.6
(-2.4)
P 		40.5
(-3)
P 		72
(-2.4)
P 		166.6
(-0.6)
P 		361.3
(3)
P 		321
C 81.1
(-2.1)
P 		80.1
(-2.1)
P 		58.4
(-2.6)
P 		38.6
(-3)
P 		131.3
(-1.1)
P 		330.9
(3)
P 		292
avr 78.1
(-2.3) 		76.2
(-2.3) 		47
(-3) 		54.4
(-2.8) 		137
(-0.8) 		297
(3) 		250
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188097_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5652
Sequence Type Exemplar sequence
Representative Public ID ZK177.6 NCBI
Target Description ZK177.6 /REP_DB=WormBase Gene ID /WP=CE26338 /TR=Q09661 /GB=AAG00051.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=CDC20
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062650(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062650 NCBI Caenorhabditis elegans ZK177.6 (CDC20) mRNA, complete cds. 11/11 None
SNAP00000012883 ENSEMBL cdna:SNAP chromosome:CEL140:II:5501622:5503602:1 11/11 None
GENEFINDER00000012899 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5501622:5503602:1 11/11 None
ZK177.6 ENSEMBL cdna:known chromosome:CEL140:II:5501603:5503876:1 gene:ZK177.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5501619-5503600(+) 100.0 100.0
Public Domain and Genome References
Gene Title CDC20
Gene Symbol fzy-1
Ensembl ZK177.6
Entrez Gene 266859 Entrez gene
SwissProt Q09373 EMBL-EBI
WormBase CE26338 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG00051 Fizzy (cdc20 protein family) homolog protein 1 [Caenorhabditis elegans] ref|NP_495051.1| ZK177.6 [Caenorhabditis elegans] sp|Q09373|FZY1_CAEEL WD-repeat containing protein fzy-1 (Fizzy protein 1) 0.0
blast CAE59122 Hypothetical protein CBG02417 [Caenorhabditis briggsae] 0.0
blast T27762 hypothetical protein ZK177.6 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.011
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.0E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.72
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.31
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.1
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.011
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.0E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.72
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.31
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.1
Sequence
Target Sequence 
>C. ELEGANS:188097_AT
tgacgtcacagctctcgaatggtctgcagatgagaatatgtgcgtcagtggatcatctga
tagaactgcaaagatttgggatggccgtcacgtcagaggaagtacagttattcaggatcc
ggaacctatgttcactattgacgagcacactggtcaagttcgtacagctcaattctgttc
attccgagacggcatcctggccactggcggtggaattaacgatggaactgtgaagttgtg
ggatgtcaagagacagttccaaaaagttcgagagcttaatgtttgtgaaactggcggtgt
cggtggtattgtattcaatcgtccgtactctgaaatgctaacagcttctgacgatggttt
cctgcgtatttaccgattcaatgcaaactacaagctatctcacgaaattcaagcatctaa
cgaacctatcatggatcttgttggatctccgttcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACGTCACAGCTCTCGAATGGTCT 570 569 960 Antisense
ATGGCCGTCACGTCAGAGGAAGTAC 388 51 1040 Antisense
GTTCACTATTGACGAGCACACTGGT 464 443 1089 Antisense
GGTCAAGTTCGTACAGCTCAATTCT 664 503 1111 Antisense
AATTCTGTTCATTCCGAGACGGCAT 413 175 1130 Antisense
CATCCTGGCCACTGGCGGTGGAATT 275 203 1152 Antisense
TGGCGGTGTCGGTGGTATTGTATTC 439 545 1251 Antisense
CAATCGTCCGTACTCTGAAATGCTA 551 177 1275 Antisense
CAGCTTCTGACGATGGTTTCCTGCG 690 203 1301 Antisense
GTTTCCTGCGTATTTACCGATTCAA 162 451 1316 Antisense
GGATCTTGTTGGATCTCCGTTCGAT 458 509 1392 Antisense
Sequence Source Affymetrix Proprietary Database