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[188094_at]

Description E01G4.4_rc /REP_DB=WormBase Gene ID /WP=CE09111 /TR=O02238 /GB=CAB05716.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_total > 82      4grp_total > 34      6grp_cgc > 75      6grp_cgc_sub > 03_04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 28
(-3)
A 		68.7
(1.2)
A 		75.3
(1.9)
A 		85.6
(3)
A 		58
B 40.6
(-3)
A 		99.5
(3)
A 		87.2
(1.7)
A 		91.6
(2.2)
A 		59
C 57
(-0.9)
A 		99.9
(3)
M 		34.6
(-3)
A 		63.8
(-0.3)
A 		65
avr 41.9
(-3) 		89.4
(3) 		65.7
(0) 		80.3
(1.9) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 30.9
(-0.8)
A 		41.7
(0.1)
A 		52.9
(1.1)
A 		60.7
(1.7)
A 		76.3
(3)
A 		3.7
(-3)
A 		73
B 43.9
(-3)
A 		67.9
(3)
P 		51.8
(-1)
A 		57.3
(0.3)
A 		52.2
(-0.9)
A 		46.5
(-2.4)
A 		24
C 12.2
(-3)
A 		44.2
(0.3)
A 		44.3
(0.3)
A 		70.3
(3)
A 		59.5
(1.9)
A 		66.1
(2.6)
M 		58
avr 29
(-3) 		51.3
(1) 		49.7
(0.7) 		62.8
(3) 		62.7
(3) 		38.8
(-1.3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 10.2
(-3)
A 		14.9
(-0)
A 		19.7
(3)
A 		12.5
(-1.5)
A 		10
B 13
(-3)
A 		24.6
(3)
A 		20.2
(0.7)
A 		19.5
(0.4)
A 		12
C 18.9
(-0.3)
A 		28.7
(3)
M 		12.1
(-2.6)
A 		10.8
(-3)
A 		18
avr 14
(-3) 		22.7
(3) 		17.3
(-0.7) 		14.3
(-2.8) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 5.7
(-1.7)
A 		14.8
(0.8)
A 		11.5
(-0.1)
A 		15.4
(0.9)
A 		23
(3)
A 		0.9
(-3)
A 		22
B 15.3
(-1.4)
A 		22.6
(3)
P 		12.6
(-3)
A 		15.2
(-1.4)
A 		21.2
(2.2)
A 		17.4
(-0.1)
A 		10
C 4.5
(-3)
A 		13.5
(0.1)
A 		11.3
(-0.7)
A 		14.1
(0.3)
A 		19.3
(2)
A 		22.1
(3)
M 		18
avr 8.5
(-3) 		17
(1) 		11.8
(-1.4) 		14.9
(0) 		21.2
(3) 		13.5
(-0.6) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188094_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28109
Sequence Type Exemplar sequence
Representative Public ID E01G4.4 NCBI
Target Description E01G4.4_rc /REP_DB=WormBase Gene ID /WP=CE09111 /TR=O02238 /GB=CAB05716.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) E01G4.4
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
E01G4.4 E01G4.4_rc /REP_DB=WormBase Gene ID /WP=CE09111 /TR=O02238 /GB=CAB05716.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /REVCOMP A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064432 11/11 Negative Strand Matching Probes A 
SNAP00000016566 9/11 Negative Strand Matching Probes None
GENEFINDER00000016576 9/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13458753-13460535(+) 89.16 100.0
Public Domain and Genome References
Ensembl E01G4.4
Sequence
Target Sequence 
>C. ELEGANS:188094_AT
gaaaatcgtccttacatgctgttgctgcataaatatcaacaaaatgtgtgctttttcacg
aaaaatccgagttaaaagccgtttctgcagctgtttttcttcggttttctccggaaaaac
cgcattttttcgcttttcctcggaattctctccatgctgctgctgctgctgatagtgttg
ctgatgaacgggcggcccattgtaaaacccgtattctgccggaggctgttgtgcatgacc
ccgtggcacaaatacgttggcattcgcattaaacatgaattgttgctgctgctgctgatg
gtagtgatgttgctgctgatgctgttgctggtgttgcatcatataattttgctgctgttg
ctggtactgctgctgctgctgctggcggggagcatacgcattcatattgtactgctgttg
ctgacgttgcggcgggtacccggcatactgctgaggcctcccttgctgctgctgctgctg
attattatagccgtagccagcctgcggattttggtacaaatcatcctgattttgctgagc
tggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAATCGTCCTTACATGCTGTTGC 409 353 268 Antisense
GTTAAAAGCCGTTTCTGCAGCTGTT 563 443 338 Antisense
GGCCCATTGTAAAACCCGTATTCTG 445 537 461 Antisense
TCTGCCGGAGGCTGTTGTGCATGAC 644 607 482 Antisense
GACCCCGTGGCACAAATACGTTGGC 563 377 504 Antisense
GTAGTGATGTTGCTGCTGATGCTGT 170 457 568 Antisense
AATTTTGCTGCTGTTGCTGGTACTG 618 175 612 Antisense
GCTGGCGGGGAGCATACGCATTCAT 120 295 648 Antisense
TTGTACTGCTGTTGCTGACGTTGCG 649 707 674 Antisense
GTAGCCAGCCTGCGGATTTTGGTAC 601 453 760 Antisense
ATCATCCTGATTTTGCTGAGCTGGC 221 29 787 Antisense
Sequence Source Affymetrix Proprietary Database