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[188093_at] 7TM chemoreceptor, sra family

Description AH6.6 /REP_DB=WormBase Gene ID /WP=CE01460 /GEN=sra-2 /TR=SW:Q09204 /GB=CAA88084.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 18      6grp_cgc > 92      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 8
(-2)
A 		1.1
(-3)
A 		13
(-1.3)
A 		41.9
(3)
A 		41
B 7.1
(-1.7)
A 		23.7
(3)
A 		3.3
(-2.8)
A 		2.6
(-3)
A 		21
C 1.9
(-3)
A 		16
(-1.9)
A 		3.1
(-2.9)
A 		77.2
(3)
P 		75
avr 5.7
(-3) 		13.6
(-1.6) 		6.5
(-2.9) 		40.6
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 22.4
(0.7)
A 		2.2
(-3)
A 		34.7
(3)
P 		31.7
(2.4)
A 		15.8
(-0.5)
A 		6.8
(-2.2)
A 		33
B 2.3
(-3)
A 		16.7
(2.1)
A 		19.1
(3)
A 		2.3
(-3)
A 		17.7
(2.5)
A 		2.5
(-2.9)
A 		17
C 3
(-2.5)
A 		22.1
(1.4)
A 		1.1
(-2.9)
A 		7.5
(-1.6)
A 		0.4
(-3)
A 		29.9
(3)
P 		30
avr 9.2
(-3) 		13.7
(-0) 		18.3
(3) 		13.8
(0) 		11.3
(-1.6) 		13.1
(-0.4) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.9
(-0.3)
A 		0.2
(-3)
A 		3.4
(0.3)
A 		6.1
(3)
A 		6
B 2.3
(-1)
A 		5.8
(3)
A 		0.8
(-2.8)
A 		0.6
(-3)
A 		5
C 0.6
(-3)
A 		4.6
(-1.1)
A 		1.1
(-2.8)
A 		13
(3)
P 		12
avr 1.9
(-2.9) 		3.5
(-0.9) 		1.8
(-3) 		6.6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 4.1
(-0.3)
A 		0.8
(-3)
A 		7.6
(2.6)
P 		8.1
(3)
A 		4.8
(0.3)
A 		1.6
(-2.3)
A 		7
B 0.8
(-2.8)
A 		5.6
(1.5)
A 		4.6
(0.6)
A 		0.6
(-3)
A 		7.2
(3)
A 		0.9
(-2.7)
A 		7
C 1.1
(-2.4)
A 		6.7
(1)
A 		0.3
(-2.9)
A 		1.5
(-2.2)
A 		0.1
(-3)
A 		10
(3)
P 		10
avr 2
(-3) 		4.4
(3) 		4.2
(2.5) 		3.4
(0.5) 		4
(2) 		4.2
(2.5) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188093_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3445
Sequence Type Exemplar sequence
Representative Public ID AH6.6 NCBI
Target Description AH6.6 /REP_DB=WormBase Gene ID /WP=CE01460 /GEN=sra-2 /TR=SW:Q09204 /GB=CAA88084.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063643(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063643 NCBI Caenorhabditis elegans Serpentine Receptor, class A (alpha) family member (sra-2) (sra-2) mRNA, complete cds. 11/11 None
GENEFINDER00000033446 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9526942:9533229:1 11/11 None
AH6.6 ENSEMBL cdna:known chromosome:CEL140:II:9528690:9529772:1 gene:AH6.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
AH6.16 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9528686-9529769(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sra family
Gene Symbol sra-2
Ensembl AH6.6
Entrez Gene 191773 Entrez gene
SwissProt Q09204 EMBL-EBI
WormBase CE01460 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88084 Hypothetical protein AH6.6 [Caenorhabditis elegans] ref|NP_496044.1| Serpentine Receptor, class A (alpha) family member (sra-2) [Caenorhabditis elegans] sp|Q09204|SRA2_CAEEL Serpentine receptor class alpha-2 (Protein sra-2) prf||2123261B chemosensory receptor 0.0
blast CAA88084 Hypothetical protein AH6.6 [Caenorhabditis elegans] ref|NP_496044.1| Serpentine Receptor, class A (alpha) family member (sra-2) [Caenorhabditis elegans] sp|Q09204|SRA2_CAEEL Serpentine receptor class alpha-2 (Protein sra-2) prf||2123261B chemosensory receptor 1.0E-179
blast CAA88083 Hypothetical protein AH6.10 [Caenorhabditis elegans] ref|NP_496052.1| Serpentine Receptor, class A (alpha) family member (sra-6) [Caenorhabditis elegans] sp|Q09208|SRA6_CAEEL Serpentine receptor class alpha-6 (Protein sra-6) prf||2123261F chemosensory receptor 1.0E-93
blast CAA88083 Hypothetical protein AH6.10 [Caenorhabditis elegans] ref|NP_496052.1| Serpentine Receptor, class A (alpha) family member (sra-6) [Caenorhabditis elegans] sp|Q09208|SRA6_CAEEL Serpentine receptor class alpha-6 (Protein sra-6) prf||2123261F chemosensory receptor 1.0E-91
blast CAA88086 Hypothetical protein AH6.7 [Caenorhabditis elegans] ref|NP_496048.1| Serpentine Receptor, class A (alpha) family member (sra-3) [Caenorhabditis elegans] sp|Q09205|SRA3_CAEEL Serpentine receptor class alpha-3 (Protein sra-3) 9.0E-78
blast CAA88086 Hypothetical protein AH6.7 [Caenorhabditis elegans] ref|NP_496048.1| Serpentine Receptor, class A (alpha) family member (sra-3) [Caenorhabditis elegans] sp|Q09205|SRA3_CAEEL Serpentine receptor class alpha-3 (Protein sra-3) 3.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 1.0E-126
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 1.2E-7
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 1.4E-35
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 1.0E-126
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 6.6E-56
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 3.2E-36
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496044.1 7 25-47,60-82,102-124,145-164,188-210,237-259,274-296
AH6.6 7 25-47,60-82,102-124,145-164,188-210,237-259,274-296
GENEFINDER00000033446 11 51-73,83-105,164-186,241-263,284-303,327-349,376-398,413-435,486-508,523-545,596-618
Sequence
Target Sequence 
>C. ELEGANS:188093_AT
gaaagactttgtgctactttttcgaaagattacaagaaaaaacaaagtgcaattaaatgt
gctgttatttcaatacttgttctgatatgtagttcttcaacaggaagactgattgtatgg
gatgatcccattgataaatataattttgcatgctatattccaccaaaagaaagttatatt
agggcaaatcattattttacaatgtgtgctgtcctgtcgactattaacttttgtatttct
acatttattttgaaatacaataaacgatgcgagtaccaaactcgtttcaaagttggtgct
cgttttcaaaagcaagaactgatagaatcaacaaaagccatttgtttcttaacggtttct
caatttgtggcagtttttcttaattcattcggaatgattgttctcgtatatatacaggaa
agtatttctcatcgaatattcaatttgttggttgtatggctttatgcgtttcctattgtt
gttttgatgtttcctgttatattagttcatcaaattcgtagcagtcgatggcgcagagct
tt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGACTTTGTGCTACTTTTTCGA 166 359 385 Antisense
TAATTTTGCATGCTATATTCCACCA 311 635 525 Antisense
TTACAATGTGTGCTGTCCTGTCGAC 55 683 581 Antisense
TGTCCTGTCGACTATTAACTTTTGT 302 557 594 Antisense
GTTTCAAAGTTGGTGCTCGTTTTCA 19 449 668 Antisense
GTGGCAGTTTTTCTTAATTCATTCG 318 489 751 Antisense
TTGTTGGTTGTATGGCTTTATGCGT 695 701 829 Antisense
GCTTTATGCGTTTCCTATTGTTGTT 189 305 843 Antisense
CCTATTGTTGTTTTGATGTTTCCTG 391 267 856 Antisense
TAGTTCATCAAATTCGTAGCAGTCG 492 645 887 Antisense
GTAGCAGTCGATGGCGCAGAGCTTT 224 435 902 Antisense
Sequence Source Affymetrix Proprietary Database