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[188092_at]

Description F08F8.3 /REP_DB=WormBase Gene ID /WP=CE27931 /GEN=kap-1 /TR=Q19205 /GB=AAK68307.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 50      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 60.3
(-1.5)
A 		118.8
(3)
A 		82.1
(0.2)
A 		40.4
(-3)
A 		78
B 58.2
(-2.7)
A 		76.8
(2.3)
A 		79.3
(3)
A 		57.1
(-3)
A 		22
C 67.4
(-2.4)
A 		131.1
(3)
A 		97.3
(0.1)
P 		60.8
(-3)
A 		70
avr 62
(-2) 		108.9
(3) 		86.2
(0.6) 		52.8
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 48.9
(-3)
A 		51.4
(-2.8)
A 		77
(-0.4)
P 		113.1
(3)
A 		103
(2.1)
P 		82.4
(0.1)
P 		64
B 83.2
(0)
A 		45.3
(-1.8)
A 		21.7
(-3)
A 		84.7
(0.1)
A 		143
(3)
P 		110.3
(1.4)
P 		121
C 76.8
(1.1)
A 		93.8
(2.4)
M 		23
(-3)
A 		28.4
(-2.6)
A 		101.6
(3)
P 		74
(0.9)
P 		79
avr 69.6
(-0.7) 		63.5
(-1.2) 		40.6
(-3) 		75.4
(-0.2) 		115.9
(3) 		88.9
(0.8) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 22
(1.9)
A 		25.8
(3)
A 		21.5
(1.7)
A 		5.9
(-3)
A 		20
B 18.6
(2.6)
A 		19
(3)
A 		18.4
(2.5)
A 		12.2
(-3)
A 		7
C 22.3
(-0.4)
A 		37.7
(3)
A 		33.9
(2.2)
P 		10.3
(-3)
A 		27
avr 21
(0.8) 		27.5
(3) 		24.6
(2) 		9.5
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 9
(-3)
A 		18.3
(-0.5)
A 		16.8
(-0.9)
P 		28.7
(2.3)
A 		31.1
(3)
P 		20.1
(0)
P 		22
B 28.9
(-0.3)
A 		15.1
(-1.9)
A 		5.3
(-3)
A 		22.4
(-1.1)
A 		58.1
(3)
P 		41.1
(1.1)
P 		53
C 28.5
(2)
A 		28.6
(2.1)
M 		5.8
(-3)
A 		5.7
(-3)
A 		32.9
(3)
P 		24.8
(1.2)
P 		27
avr 22.1
(-0.6) 		20.7
(-0.8) 		9.3
(-3) 		18.9
(-1.2) 		40.7
(3) 		28.7
(0.7) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188092_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6036
Sequence Type Exemplar sequence
Representative Public ID F08F8.3 NCBI
Target Description F08F8.3 /REP_DB=WormBase Gene ID /WP=CE27931 /GEN=kap-1 /TR=Q19205 /GB=AAK68307.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066218(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066218 NCBI Caenorhabditis elegans F08F8.6 (F08F8.6) mRNA, complete cds. 11/11 None
SNAP00000010809 ENSEMBL cdna:SNAP chromosome:CEL140:III:7343693:7345746:1 10/11 None
GENEFINDER00000010819 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7343693:7345746:1 10/11 None
F08F8.6 ENSEMBL cdna:known chromosome:CEL140:III:7343693:7345746:1 gene:F08F8.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7338920-7345744(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F08F8.6
Entrez Gene 184198 Entrez gene
WormBase CE39011 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68309 Hypothetical protein F08F8.6 [Caenorhabditis elegans] ref|NP_498619.1| F08F8.6 [Caenorhabditis elegans] 1.0E-170
blast AAK68309 Hypothetical protein F08F8.6 [Caenorhabditis elegans] ref|NP_498619.1| F08F8.6 [Caenorhabditis elegans] 1.0E-168
blast T15977 hypothetical protein F08F8.3 - Caenorhabditis elegans 1.0E-163
blast T15977 hypothetical protein F08F8.3 - Caenorhabditis elegans 1.0E-161
blast AAK68309 Hypothetical protein F08F8.6 [Caenorhabditis elegans] ref|NP_498619.1| F08F8.6 [Caenorhabditis elegans] 1.0E-115
blast T15977 hypothetical protein F08F8.3 - Caenorhabditis elegans 1.0E-115
blast CAE57615 Hypothetical protein CBG00596 [Caenorhabditis briggsae] 7.0E-66
blast CAE57615 Hypothetical protein CBG00596 [Caenorhabditis briggsae] 9.0E-66
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498619.1 1 35-57
F08F8.6 1 35-57
SNAP00000010809 1 35-57
Sequence
Target Sequence 
>C. ELEGANS:188092_AT
tagttgcgttgcaaattctccttccaatcgaaatctgcaaacaaatctgtcatcctaatc
atttgggttctgtcaatgtgaactactcgacaaatggacaaaaacaggaaacaaaaccag
gaaaaaaagataatcgatatccagaagatgtcacatttccaccatctgatattgaacgtg
tttatgacacgatgggagatgaagatactcgtaaatcgaagactatgacacttggaacta
ttgaagagcctgctccaaaatcggccatgctcagcttacagaagacaccaaaggagagtg
agactgatctgaaaaagacattgccacgttctcctcctccaattccgaatcgtaagcagc
cgtctcgtgagatcatgttgactccgaagcaatctacaaagactgcaaatgctggaggaa
gaagcaaggagccgtcgttgaatactgcaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGTTGCGTTGCAAATTCTCCTTCC 447 653 2183 Antisense
TTCTCCTTCCAATCGAAATCTGCAA 597 693 2198 Antisense
GTCATCCTAATCATTTGGGTTCTGT 33 467 2231 Antisense
ATGTCACATTTCCACCATCTGATAT 80 49 2330 Antisense
AAGAGCCTGCTCCAAAATCGGCCAT 127 155 2426 Antisense
TCGGCCATGCTCAGCTTACAGAAGA 582 607 2443 Antisense
GAAAAAGACATTGCCACGTTCTCCT 318 355 2493 Antisense
TCCTCCTCCAATTCCGAATCGTAAG 643 591 2514 Antisense
GTAAGCAGCCGTCTCGTGAGATCAT 24 461 2534 Antisense
GATCATGTTGACTCCGAAGCAATCT 568 419 2553 Antisense
GGAGCCGTCGTTGAATACTGCAATG 527 521 2610 Antisense
Sequence Source Affymetrix Proprietary Database