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[188091_at]

Description F08B6.2 /REP_DB=WormBase Gene ID /WP=CE20656 /GEN=gpc-2 /TR=Q9TYS9 /GB=AAC78236.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 13      4grp_highest_8_8 > 03      4grp_high_8_8 > 46      6grp_highest_nonorm > 14      6grp_total > 13      4grp_total > 42      6grp_highest_sub > De      6grp_cgc > 30      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1384
1 2 3 4 range
A 4168.5
(-3)
P 		5360.4
(3)
P 		5082.1
(1.6)
P 		4574.2
(-1)
P 		1192
B 3976
(-3)
P 		5082.7
(3)
P 		4856.5
(1.8)
P 		4335.3
(-1.1)
P 		1107
C 4353.3
(-1.7)
P 		4863.8
(3)
P 		4360.6
(-1.7)
P 		4218.8
(-3)
P 		645
avr 4165.9
(-3) 		5102.3
(3) 		4766.4
(0.8) 		4376.1
(-1.7) 		936

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2661
1 2 3 4 5 6 range
A 5243.4
(3)
P 		5208.1
(2.9)
P 		5143.8
(2.8)
P 		4155.6
(0.5)
P 		3274.6
(-1.4)
P 		2582.1
(-3)
P 		2661
B 4479
(3)
P 		4474.9
(3)
P 		3593.6
(-1)
P 		3835.7
(0.1)
P 		3798.1
(-0.1)
P 		3159.8
(-3)
P 		1319
C 4489.6
(1.5)
P 		4994.7
(3)
P 		4012.9
(0.2)
P 		4300.1
(1)
P 		2914.6
(-3)
P 		3614.7
(-1)
P 		2080
avr 4737.3
(2.5) 		4892.6
(3) 		4250.1
(0.8) 		4097.1
(0.3) 		3329.1
(-2.3) 		3118.9
(-3) 		1774
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 850
1 2 3 4 range
A 1517.8
(3)
P 		1163.6
(0.5)
P 		1328.6
(1.7)
P 		669.6
(-3)
P 		848
B 1267.9
(3)
P 		1255.3
(2.8)
P 		1125.4
(0.5)
P 		923.9
(-3)
P 		344
C 1441.1
(2.4)
P 		1398.4
(2.1)
P 		1519.8
(3)
P 		711.4
(-3)
P 		808
avr 1408.9
(3) 		1272.4
(1.7) 		1324.6
(2.2) 		768.3
(-3) 		641

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1224
1 2 3 4 5 6 range
A 966.6
(-1.3)
P 		1852.3
(3)
P 		1120.2
(-0.6)
P 		1053.9
(-0.9)
P 		988.1
(-1.2)
P 		628.7
(-3)
P 		1224
B 1558.5
(3)
P 		1489.5
(2.4)
P 		872.6
(-3)
P 		1015.9
(-1.7)
P 		1543.1
(2.9)
P 		1178.3
(-0.3)
P 		686
C 1664.1
(3)
P 		1524
(1.9)
P 		1021.3
(-1.8)
P 		864.8
(-3)
P 		943.1
(-2.4)
P 		1210
(-0.4)
P 		799
avr 1396.4
(0.9) 		1621.9
(3) 		1004.7
(-2.8) 		978.2
(-3) 		1158.1
(-1.3) 		1005.7
(-2.7) 		644
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188091_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2352
Sequence Type Exemplar sequence
Representative Public ID F08B6.2 NCBI
Target Description F08B6.2 /REP_DB=WormBase Gene ID /WP=CE20656 /GEN=gpc-2 /TR=Q9TYS9 /GB=AAC78236.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059534(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059534 NCBI Caenorhabditis elegans G Protein, Gamma subunit family member (gpc-2) (gpc-2) mRNA, complete cds. 11/11 None
SNAP00000014328 ENSEMBL cdna:SNAP chromosome:CEL140:I:6765902:6766141:1 11/11 None
GENEFINDER00000014335 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6765902:6766141:1 11/11 None
F08B6.2.2 ENSEMBL cdna:known chromosome:CEL140:I:6765890:6766652:1 gene:F08B6.2 11/11 None
F08B6.2.3 ENSEMBL cdna:known chromosome:CEL140:I:6765897:6766652:1 gene:F08B6.2 11/11 None
F08B6.2.1 ENSEMBL cdna:known chromosome:CEL140:I:6765897:6766652:1 gene:F08B6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6765830-6766070(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol gpc-2
Ensembl F08B6.2
Entrez Gene 172396 Entrez gene
SwissProt Q9TYS9 EMBL-EBI
WormBase CE20656 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5834 heterotrimeric G-protein complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4871 signal transducer activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC78236 G protein, gamma subunit protein 2 [Caenorhabditis elegans] ref|NP_491935.1| G Protein, Gamma subunit family member (gpc-2) [Caenorhabditis elegans] gb|AAK55966.1| heterotrimeric G protein gamma subunit 2 [Caenorhabditis elegans] 3.0E-28
blast AAW02911 gpc-2 [Caenorhabditis briggsae] emb|CAE60445.1| Hypothetical protein CBG04053 [Caenorhabditis briggsae] 1.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR001770 EMBL-EBI G-protein, gamma subunit 2.0E-10
Sequence
Target Sequence 
>C. ELEGANS:188091_AT
ggataaatctgacatgcaacgaaccgtcgactcgcttcgcagccagctcaatattgagcg
tactccgatcactgtttcggcagccgaacttcgtcgcttcaccgaaagccaagaagatcc
acttgtgaacccaatcgacaagaaggttaacccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATAAATCTGACATGCAACGAACC 211 511 15 Antisense
TGACATGCAACGAACCGTCGACTCG 5 571 24 Antisense
GCTTCGCAGCCAGCTCAATATTGAG 237 307 48 Antisense
TATTGAGCGTACTCCGATCACTGTT 282 663 66 Antisense
GTACTCCGATCACTGTTTCGGCAGC 664 459 74 Antisense
TCCGATCACTGTTTCGGCAGCCGAA 38 595 78 Antisense
TGTTTCGGCAGCCGAACTTCGTCGC 145 559 87 Antisense
TCACCGAAAGCCAAGAAGATCCACT 76 625 113 Antisense
GAAGATCCACTTGTGAACCCAATCG 624 337 127 Antisense
GATCCACTTGTGAACCCAATCGACA 524 415 130 Antisense
CCAATCGACAAGAAGGTTAACCCAT 305 269 145 Antisense
Sequence Source Affymetrix Proprietary Database