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[188090_at]

Description F56H1.1 /REP_DB=WormBase Gene ID /WP=CE28468 /GEN=ptd-1 /TR=O76372 /GB=AAC19198.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 80      6grp_total > 71      4grp_total > 49      6grp_cgc > 74      6grp_high1_sub > 02_03_04_05      6grp_cgc_sub > 02_03_04_05      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 295
1 2 3 4 range
A 56.2
(-3)
P 		253.1
(1.4)
P 		325.2
(3)
P 		71.3
(-2.7)
A 		269
B 52.9
(-2.4)
M 		248.6
(3)
P 		220.7
(2.2)
P 		29.8
(-3)
A 		219
C 53.9
(-2.9)
M 		249.4
(2.3)
P 		274.3
(3)
P 		51.9
(-3)
A 		222
avr 54.3
(-2.9) 		250.4
(2.4) 		273.4
(3) 		51
(-3) 		222

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 267
1 2 3 4 5 6 range
A 64.4
(-3)
M 		249.8
(1.2)
P 		265.2
(1.5)
P 		331.5
(3)
P 		171.5
(-0.6)
P 		89
(-2.4)
P 		267
B 70.7
(-3)
P 		251
(3)
P 		158.9
(-0.1)
P 		244
(2.8)
P 		225.4
(2.1)
P 		87.2
(-2.5)
P 		180
C 87
(-2.9)
P 		220.2
(0.6)
P 		158.1
(-1)
P 		307.3
(3)
P 		190
(-0.2)
P 		85.1
(-3)
P 		222
avr 74
(-3) 		240.3
(1.5) 		194.1
(0.3) 		294.3
(3) 		195.6
(0.3) 		87.1
(-2.6) 		220
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 20.5
(-2.2)
P 		55
(0.6)
P 		85
(3)
P 		10.4
(-3)
A 		75
B 16.9
(-1.9)
M 		61.4
(3)
P 		51.1
(1.9)
P 		6.4
(-3)
A 		55
C 17.8
(-2.4)
M 		71.7
(1.3)
P 		95.6
(3)
P 		8.8
(-3)
A 		87
avr 18.4
(-2.1) 		62.7
(1.7) 		77.2
(3) 		8.5
(-3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 11.9
(-3)
M 		88.8
(3)
P 		57.7
(0.6)
P 		84.1
(2.6)
P 		51.7
(0.1)
P 		21.7
(-2.2)
P 		77
B 24.6
(-3)
P 		83.5
(2.3)
P 		38.6
(-1.7)
P 		64.6
(0.6)
P 		91.6
(3)
P 		32.5
(-2.3)
P 		67
C 32.3
(-2.4)
P 		67.2
(3)
P 		40.3
(-1.2)
P 		61.8
(2.2)
P 		61.5
(2.1)
P 		28.5
(-3)
P 		39
avr 22.9
(-3) 		79.8
(3) 		45.5
(-0.6) 		70.2
(2) 		68.3
(1.8) 		27.6
(-2.5) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188090_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2482
Sequence Type Exemplar sequence
Representative Public ID F56H1.1 NCBI
Target Description F56H1.1 /REP_DB=WormBase Gene ID /WP=CE28468 /GEN=ptd-1 /TR=O76372 /GB=AAC19198.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059272(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059272 NCBI Caenorhabditis elegans abnormal CHEmotaxis family member (che-14) (che-14) mRNA, complete cds. 11/11 A 
GENEFINDER00000038427 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5752320:5762255:1 11/11 None
SNAP00000038419 ENSEMBL cdna:SNAP chromosome:CEL140:I:5757114:5762255:1 11/11 None
F56H1.1 ENSEMBL cdna:known chromosome:CEL140:I:5754861:5762427:1 gene:F56H1.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5754860-5762255(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol che-14
Ensembl F56H1.1
Entrez Gene 172240 Entrez gene
SwissProt O76372 EMBL-EBI
WormBase CE28468 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8233 peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC19198 Abnormal chemotaxis protein 14 [Caenorhabditis elegans] ref|NP_491673.1| abnormal CHEmotaxis family member (che-14) [Caenorhabditis elegans] emb|CAB90211.1| CHE-14 protein [Caenorhabditis elegans] 0.0
blast CAE67389 Hypothetical protein CBG12874 [Caenorhabditis briggsae] 0.0
blast AAY44003 Hypothetical protein F56H1.6 [Caenorhabditis elegans] ref|NP_001021512.1| F56H1.6 [Caenorhabditis elegans] 0.0
blast NP_505396 disPaTchED family member (ptd-2) [Caenorhabditis elegans] gb|AAG24025.2| Dispatched family protein 2 [Caenorhabditis elegans] 9.0E-52
Protein Domains
Database ID Description E-Value
Pfam IPR002085 EMBL-EBI Zinc-containing alcohol dehydrogenase superfamily 1.2E-36
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491673.1 14 19-41,267-289,321-343,347-369,376-398,413-435,448-470,485-504,509-531,743-765,772-794,798-820,840-862,866-888
F56H1.1 14 19-41,267-289,321-343,347-369,376-398,413-435,448-470,485-504,509-531,743-765,772-794,798-820,840-862,866-888
GENEFINDER00000038427 13 579-601,633-655,659-681,688-710,725-747,760-782,797-816,821-843,1055-1077,1084-1106,1110-1132,1152-1174,1178-1200
SNAP00000038419 8 280-302,307-329,357-379,592-614,621-643,647-669,689-711,715-737
Sequence
Target Sequence 
>C. ELEGANS:188090_AT
ggatggtgggctcctgaatggtggcttatgagcacatggttcgatcttctcagttcaata
gtacaagattgtttgagttctgttgttggatcacttgtttttgttgcaatatttgcattt
attcaactgaaatttcaagcattcgcagctgttgtgacaatagcttgtgtaatatttaca
tcatcagctattgtaacccttcttggttgggtacttggagtacttgaagctgttattctt
gtacttgttgtcggattatcattcgattatactctacattatggagctgcacttcccgaa
catggatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGGTGGGCTCCTGAATGGTGGC 201 515 2341 Antisense
GGTGGCTTATGAGCACATGGTTCGA 162 499 2360 Antisense
CATGGTTCGATCTTCTCAGTTCAAT 492 209 2375 Antisense
TGAGTTCTGTTGTTGGATCACTTGT 81 569 2414 Antisense
AAGCATTCGCAGCTGTTGTGACAAT 290 151 2477 Antisense
ATCAGCTATTGTAACCCTTCTTGGT 677 27 2523 Antisense
TTGAAGCTGTTATTCTTGTACTTGT 161 705 2564 Antisense
TGTACTTGTTGTCGGATTATCATTC 534 559 2580 Antisense
ATCATTCGATTATACTCTACATTAT 372 31 2598 Antisense
TACATTATGGAGCTGCACTTCCCGA 332 645 2615 Antisense
AGCTGCACTTCCCGAACATGGATGT 242 81 2625 Antisense
Sequence Source Affymetrix Proprietary Database