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[188088_at]

Description F56F3.6 /REP_DB=WormBase Gene ID /WP=CE00681 /GEN=ins-17 /TR=Q20896 /GB=CAA83603.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 08      4grp_high_8_8 > 02      6grp_highest_nonorm > 76      6grp_total > 18      4grp_total > 14      6grp_highest_sub > De      6grp_cgc > 01      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2816
1 2 3 4 range
A 2191.6
(1)
P 		500
(-3)
P 		487.1
(-3)
P 		3035.8
(3)
P 		2549
B 1898.7
(0.1)
P 		636.1
(-2.6)
P 		449
(-3)
A 		3220.5
(3)
P 		2772
C 2137.4
(2.9)
P 		766.7
(-1.8)
P 		404.6
(-3)
P 		2177.9
(3)
P 		1773
avr 2075.9
(1.1) 		634.3
(-2.5) 		446.9
(-3) 		2811.4
(3) 		2365

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 837
1 2 3 4 5 6 range
A 1638.4
(3)
P 		823.9
(-2.8)
P 		1120.2
(-0.7)
P 		801
(-3)
P 		1116.2
(-0.7)
P 		995.4
(-1.6)
P 		837
B 1284.5
(2.6)
P 		1152.6
(0.9)
P 		856.7
(-3)
P 		1314.5
(3)
P 		1239
(2)
P 		1001.6
(-1.1)
P 		458
C 1228
(3)
P 		1043.2
(-1)
P 		990.1
(-2.1)
P 		1046.4
(-0.9)
P 		948.2
(-3)
P 		1108.8
(0.4)
P 		280
avr 1383.6
(3) 		1006.6
(-2.7) 		989
(-3) 		1054
(-2) 		1101.1
(-1.3) 		1035.3
(-2.3) 		395
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 694
1 2 3 4 range
A 798
(3)
P 		108.5
(-3)
P 		127.3
(-2.8)
P 		444.4
(-0.1)
P 		690
B 605.5
(2.2)
P 		157.1
(-2.5)
P 		104
(-3)
A 		686.3
(3)
P 		582
C 707.5
(3)
P 		220.4
(-2.2)
P 		141
(-3)
P 		367.2
(-0.6)
P 		567
avr 703.7
(3) 		162
(-2.6) 		124.1
(-3) 		499.3
(0.9) 		580

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 300
1 2 3 4 5 6 range
A 302
(1.4)
P 		293
(1)
P 		244
(-1.2)
P 		203.1
(-3)
P 		336.8
(3)
P 		242.3
(-1.2)
P 		134
B 446.9
(1.9)
P 		383.6
(0.6)
P 		208
(-3)
P 		348.2
(-0.2)
P 		503.4
(3)
P 		373.5
(0.4)
P 		295
C 455.2
(3)
P 		318.3
(-0.4)
P 		252
(-2)
P 		210.4
(-3)
P 		306.8
(-0.6)
P 		371.2
(0.9)
P 		245
avr 401.4
(3) 		331.6
(0.5) 		234.7
(-3) 		253.9
(-2.3) 		382.3
(2.3) 		329
(0.4) 		167
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188088_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7434
Sequence Type Exemplar sequence
Representative Public ID F56F3.6 NCBI
Target Description F56F3.6 /REP_DB=WormBase Gene ID /WP=CE00681 /GEN=ins-17 /TR=Q20896 /GB=CAA83603.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065510(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065510 NCBI Caenorhabditis elegans INSulin related family member (ins-17) (ins-17) mRNA, complete cds. 11/11 None
GENEFINDER00000037233 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4477063:4477538:-1 11/11 None
F56F3.6.2 ENSEMBL cdna:known chromosome:CEL140:III:4476854:4477540:-1 gene:F56F3.6 11/11 None
F56F3.6.1 ENSEMBL cdna:known chromosome:CEL140:III:4476884:4477549:-1 gene:F56F3.6 11/11 None
F56F3.6.3 ENSEMBL cdna:known chromosome:CEL140:III:4477008:4477538:-1 gene:F56F3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4477062-4477487(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ins-17
Ensembl F56F3.6
Entrez Gene 175585 Entrez gene
SwissProt Q20896 EMBL-EBI
WormBase CE00681 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7582 physiological process inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5179 hormone activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA83603 Hypothetical protein F56F3.6 [Caenorhabditis elegans] ref|NP_497911.1| INSulin related family member (ins-17) [Caenorhabditis elegans] dbj|BAA82662.1| Ceinsulin-2 [Caenorhabditis elegans] 1.0E-51
blast CAE71196 Hypothetical protein CBG18055 [Caenorhabditis briggsae] 3.0E-43
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497911.1 1 7-29
F56F3.6.2 1 7-29
F56F3.6.1 1 7-29
F56F3.6.3 1 7-29
GENEFINDER00000037233 1 19-41
Sequence
Target Sequence 
>C. ELEGANS:188088_AT
cagaggggtactccttttactgtctttgatggctgctgtagccgcattcgggctgttttc
tagaccggctccaatcactcgggacactatccgaccaccacgtgccaaacacggttcgct
gaaattatgcccaccaggtggtgcctcattccttgacgctttcaacttgatttgcccaat
gcgccgtcgacgcaggagtgtttcagaaaactacaacgacggcggtggcagccttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGAGGGGTACTCCTTTTACTGTCT 27 205 24 Antisense
TTGATGGCTGCTGTAGCCGCATTCG 220 707 49 Antisense
GCCGCATTCGGGCTGTTTTCTAGAC 447 285 64 Antisense
AATCACTCGGGACACTATCCGACCA 391 171 96 Antisense
CCACCACGTGCCAAACACGGTTCGC 569 269 118 Antisense
ACGGTTCGCTGAAATTATGCCCACC 692 95 134 Antisense
TATGCCCACCAGGTGGTGCCTCATT 390 657 149 Antisense
TCATTCCTTGACGCTTTCAACTTGA 155 619 169 Antisense
TTCAACTTGATTTGCCCAATGCGCC 376 685 184 Antisense
AATGCGCCGTCGACGCAGGAGTGTT 282 167 201 Antisense
TACAACGACGGCGGTGGCAGCCTTT 271 641 235 Antisense
Sequence Source Affymetrix Proprietary Database