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[188087_at]

Description T26A5.7 /REP_DB=WormBase Gene ID /WP=CE19602 /GEN=set-1 /TR=Q22795 /GB=AAC77512.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 69      4grp_highest_8_8 > 04      4grp_high_8_8 > 30      6grp_highest_nonorm > 84      6grp_total > 79      4grp_total > 33      6grp_highest_sub > Cu      6grp_cgc > 29      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 520.7
(-0.4)
P 		485.9
(-3)
P 		549.4
(1.7)
P 		566.9
(3)
P 		81
B 472.4
(-3)
P 		590.7
(1)
P 		617.6
(1.9)
P 		650.1
(3)
P 		178
C 541.5
(-1.8)
P 		666
(3)
P 		509.9
(-3)
P 		537.8
(-1.9)
P 		156
avr 511.5
(-3) 		580.9
(2.7) 		559
(0.9) 		584.9
(3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 416
1 2 3 4 5 6 range
A 640.4
(0.2)
P 		622.8
(-0.2)
P 		484.2
(-3)
P 		683.3
(1.1)
P 		668.2
(0.7)
P 		779
(3)
P 		295
B 676.7
(-1.1)
P 		661.6
(-1.3)
P 		570.4
(-3)
P 		617.9
(-2.1)
P 		801.4
(1.2)
P 		900.4
(3)
P 		330
C 599.4
(-1.3)
P 		728.6
(0.8)
P 		494.7
(-3)
P 		698.1
(0.3)
P 		663.1
(-0.3)
P 		864.8
(3)
P 		370
avr 638.8
(-0.8) 		671
(-0.2) 		516.4
(-3) 		666.4
(-0.3) 		710.9
(0.5) 		848.1
(3) 		332
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 189.6
(3)
P 		105.5
(-1.7)
P 		143.6
(0.4)
P 		83
(-3)
P 		107
B 150.6
(3)
P 		145.9
(0.7)
P 		143.1
(-0.7)
P 		138.5
(-3)
P 		12
C 179.2
(2.3)
P 		191.5
(3)
P 		177.7
(2.2)
P 		90.7
(-3)
P 		101
avr 173.1
(3) 		147.6
(0.8) 		154.8
(1.4) 		104.1
(-3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 230
1 2 3 4 5 6 range
A 118.1
(-2.3)
P 		221.5
(3)
P 		105.4
(-3)
P 		173.3
(0.5)
P 		201.6
(2)
P 		189.7
(1.4)
P 		116
B 235.5
(-0)
P 		220.2
(-0.5)
P 		138.5
(-3)
P 		163.7
(-2.2)
P 		325.6
(2.7)
P 		335.7
(3)
P 		197
C 222.2
(0.5)
P 		222.3
(0.5)
P 		125.9
(-3)
P 		140.4
(-2.5)
P 		214.6
(0.3)
P 		289.5
(3)
P 		164
avr 191.9
(-0.2) 		221.3
(1) 		123.3
(-3) 		159.1
(-1.6) 		247.3
(2) 		271.6
(3) 		148
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188087_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6087
Sequence Type Exemplar sequence
Representative Public ID T26A5.7 NCBI
Target Description T26A5.7 /REP_DB=WormBase Gene ID /WP=CE19602 /GEN=set-1 /TR=Q22795 /GB=AAC77512.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027626(11), NM_001027625(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027626 NCBI Caenorhabditis elegans SET (trithorax/polycomb) domain containing family member (set-1) (set-1) mRNA, complete cds. 11/11 None
NM_001027625 NCBI Caenorhabditis elegans SET (trithorax/polycomb) domain containing family member (set-1) (set-1) mRNA, complete cds. 11/11 None
SNAP00000033260 ENSEMBL cdna:SNAP chromosome:CEL140:III:6451290:6452293:-1 11/11 None
GENEFINDER00000033286 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6451290:6452535:-1 11/11 None
T26A5.7b.1 ENSEMBL cdna:known chromosome:CEL140:III:6450729:6452303:-1 gene:T26A5.7 11/11 None
T26A5.7b.2 ENSEMBL cdna:known chromosome:CEL140:III:6451290:6452309:-1 gene:T26A5.7 11/11 None
T26A5.7a ENSEMBL cdna:known chromosome:CEL140:III:6451290:6452309:-1 gene:T26A5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6451288-6452292(-) 100.0 100.0
Public Domain and Genome References
Ensembl T26A5.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001022796 SET (trithorax/polycomb) domain containing family member (set-1) [Caenorhabditis elegans] gb|AAC77512.1| Set (trithorax/polycomb) domain containing protein 1, isoform a [Caenorhabditis elegans] sp|Q22795|SET1_CAEEL Protein set-1 1.0E-126
blast CAE72499 Hypothetical protein CBG19678 [Caenorhabditis briggsae] 9.0E-79
blast CAE72499 Hypothetical protein CBG19678 [Caenorhabditis briggsae] 1.0E-78
blast CAE69920 Hypothetical protein CBG16281 [Caenorhabditis briggsae] 1.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR001214 EMBL-EBI Nuclear protein SET 1.7E-23
Pfam IPR001214 EMBL-EBI Nuclear protein SET 9.0E-39
Pfam IPR001214 EMBL-EBI Nuclear protein SET 9.0E-39
Sequence
Target Sequence 
>C. ELEGANS:188087_AT
cttcacactcttcatcttcaggaagaatgacaccgtcgaaaaacacaaggagcagaaaag
gagtgtcggtgaaagatgtctcaaaccataaaatcacagaattcttccaagtgcggcgaa
gtaatcggaagacgagcaagcaaattagcgatgaagctaaacatgctcttcgcgataccg
tactcaaggggactaatgaacgacttcttgaagtgtacaaagatgttgtgaaggggcgag
gaattcgaacgaaagttaactttgaaaaaggagactttgttgtcgaatacagaggtgtta
tgatggagtactcggaagcaaaagtgatagaagaacaatattcgaatgatgaggaaatcg
gatcctacatgtacttttttgagcacaacaataaaaaatggtgtatcgatgcgacaaaag
aatctccatggaaaggacgactcatcaatcattccgtgttaaggccgaatctcaaaacga
aagtggtggaaatcgatgggtcgcatcacctgattctcgtcgccaggcgtcaaatcgcac
aaggagaagagcttctctacgattatggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCACACTCTTCATCTTCAGGAAG 645 221 122 Antisense
ACAGAATTCTTCCAAGTGCGGCGAA 32 109 217 Antisense
TAAACATGCTCTTCGCGATACCGTA 376 639 279 Antisense
GCGATACCGTACTCAAGGGGACTAA 479 289 293 Antisense
GGGGACTAATGAACGACTTCTTGAA 702 497 309 Antisense
GGAAATCGGATCCTACATGTACTTT 657 525 474 Antisense
GGACGACTCATCAATCATTCCGTGT 6 525 556 Antisense
CATTCCGTGTTAAGGCCGAATCTCA 359 217 571 Antisense
ATCGATGGGTCGCATCACCTGATTC 579 33 613 Antisense
GATTCTCGTCGCCAGGCGTCAAATC 516 431 633 Antisense
GAAGAGCTTCTCTACGATTATGGAG 347 339 667 Antisense
Sequence Source Affymetrix Proprietary Database