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[188086_at] 7TM chemoreceptor, sra family

Description AH6.10 /REP_DB=WormBase Gene ID /WP=CE01451 /GEN=sra-6 /TR=SW:Q09208 /GB=CAA88083.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 34      6grp_total_sub > Hat      6grp_cgc > 54      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 4.7
(-3)
A 		27.9
(-0.9)
A 		8.1
(-2.7)
A 		69.9
(3)
A 		65
B 33.2
(-2)
A 		34.4
(-1.7)
A 		29.6
(-3)
A 		51.2
(3)
A 		22
C 19.8
(-2.2)
A 		66.2
(3)
A 		53
(1.5)
A 		12.3
(-3)
A 		54
avr 19.2
(-3) 		42.8
(2.6) 		30.2
(-0.4) 		44.5
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 10.8
(2.2)
A 		9.3
(1.1)
A 		3.7
(-3)
A 		8.6
(0.6)
A 		9.1
(1)
A 		11.9
(3)
A 		8
B 6.8
(-3)
A 		7.7
(-2.8)
A 		9.7
(-2.3)
A 		10
(-2.2)
A 		26.4
(1.6)
A 		32.3
(3)
A 		26
C 8.6
(-2.9)
A 		68.6
(3)
A 		10.8
(-2.7)
A 		12
(-2.6)
A 		7.8
(-3)
A 		10.8
(-2.7)
A 		61
avr 8.7
(-2.8) 		28.5
(3) 		8.1
(-3) 		10.2
(-2.4) 		14.4
(-1.1) 		18.3
(0) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 1.7
(-3)
A 		6
(0)
A 		2.1
(-2.7)
A 		10.2
(3)
A 		9
B 10.6
(2.6)
A 		8.5
(-0.6)
A 		6.9
(-3)
A 		10.9
(3)
A 		4
C 6.6
(-1.4)
A 		19
(3)
A 		18.5
(2.8)
A 		2.1
(-3)
A 		17
avr 6.3
(-3) 		11.2
(3) 		9.2
(0.6) 		7.7
(-1.3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 2
(-0.1)
A 		3.3
(3)
A 		0.8
(-3)
A 		2.2
(0.4)
A 		2.8
(1.8)
A 		2.9
(2)
A 		3
B 2.4
(-3)
A 		2.6
(-2.9)
A 		2.4
(-3)
A 		2.7
(-2.8)
A 		10.7
(2.1)
A 		12.1
(3)
A 		10
C 3.2
(-2.7)
A 		20.9
(3)
A 		2.8
(-2.9)
A 		2.4
(-3)
A 		2.5
(-3)
A 		3.6
(-2.6)
A 		19
avr 2.5
(-2.6) 		8.9
(3) 		2
(-3) 		2.4
(-2.7) 		5.3
(-0.1) 		6.2
(0.7) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188086_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3396
Sequence Type Exemplar sequence
Representative Public ID AH6.10 NCBI
Target Description AH6.10 /REP_DB=WormBase Gene ID /WP=CE01451 /GEN=sra-6 /TR=SW:Q09208 /GB=CAA88083.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063651(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063651 NCBI Caenorhabditis elegans Serpentine Receptor, class A (alpha) family member (sra-6) (sra-6) mRNA, complete cds. 11/11 None
SNAP00000033438 ENSEMBL cdna:SNAP chromosome:CEL140:II:9548520:9549609:-1 11/11 None
GENEFINDER00000033441 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9547668:9549617:-1 11/11 None
AH6.10 ENSEMBL cdna:known chromosome:CEL140:II:9548520:9549609:-1 gene:AH6.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9548516-9549606(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sra family
Gene Symbol sra-6
Ensembl AH6.10
Entrez Gene 191777 Entrez gene
SwissProt Q09208 EMBL-EBI
WormBase CE01451 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88083 Hypothetical protein AH6.10 [Caenorhabditis elegans] ref|NP_496052.1| Serpentine Receptor, class A (alpha) family member (sra-6) [Caenorhabditis elegans] sp|Q09208|SRA6_CAEEL Serpentine receptor class alpha-6 (Protein sra-6) prf||2123261F chemosensory receptor 1.0E-173
blast CAA88084 Hypothetical protein AH6.6 [Caenorhabditis elegans] ref|NP_496044.1| Serpentine Receptor, class A (alpha) family member (sra-2) [Caenorhabditis elegans] sp|Q09204|SRA2_CAEEL Serpentine receptor class alpha-2 (Protein sra-2) prf||2123261B chemosensory receptor 1.0E-92
blast CAA88082 Hypothetical protein AH6.14 [Caenorhabditis elegans] ref|NP_496046.1| Serpentine Receptor, class A (alpha) family member (sra-9) [Caenorhabditis elegans] sp|Q09212|SRA9_CAEEL Serpentine receptor class alpha-9 (Protein sra-9) 4.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 1.0E-126
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496052.1 7 25-47,68-87,107-129,142-164,188-207,240-262,272-294
AH6.10 7 25-47,68-87,107-129,142-164,188-207,240-262,272-294
SNAP00000033438 7 25-47,68-87,107-129,142-164,188-207,240-262,272-294
GENEFINDER00000033441 7 28-50,71-90,110-132,145-167,191-210,243-265,275-297
Sequence
Target Sequence 
>C. ELEGANS:188086_AT
gtttctaagagtgttgttccccgattcaacttattttccatattatccactgtattaaca
cttttcaatttaattgtttcaatttttattcagagatataacaagcgattcgaatttgaa
acacgcttcaaagttggagctcgattccagaaacaagaactcatcgaatcaaccggagca
atttgctttctggctctttctcaatttttatggatgttcatgtactcgtttggaattctg
atactgcgaattatcagggaagatattctgccaagtacattttatttttggattgcctgg
tgctacacaatgccatttattgccctcatgttccccgttctcttgatctaccgaattcgc
aaaacccgcgctcggcggacagagaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTCTAAGAGTGTTGTTCCCCGAT 293 447 544 Antisense
TTCCCCGATTCAACTTATTTTCCAT 539 697 560 Antisense
GAACTCATCGAATCAACCGGAGCAA 479 349 700 Antisense
AGCAATTTGCTTTCTGGCTCTTTCT 176 77 720 Antisense
ATGGATGTTCATGTACTCGTTTGGA 618 49 753 Antisense
GAAGATATTCTGCCAAGTACATTTT 510 337 802 Antisense
GGATTGCCTGGTGCTACACAATGCC 219 509 833 Antisense
CAATGCCATTTATTGCCCTCATGTT 668 181 851 Antisense
CGTTCTCTTGATCTACCGAATTCGC 83 247 879 Antisense
CTACCGAATTCGCAAAACCCGCGCT 332 1 891 Antisense
ACCCGCGCTCGGCGGACAGAGAAAA 640 87 907 Antisense
Sequence Source Affymetrix Proprietary Database