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[188084_s_at]

Description K04B12.1 /REP_DB=WormBase Gene ID /WP=CE16224 /GEN=plx-2 /TR=O45657 /GB=CAB05755.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 16      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 30      6grp_total > 15      4grp_total > 46      6grp_highest_sub > De      6grp_cgc > 23      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 892
1 2 3 4 range
A 1331.2
(3)
P 		618.4
(-1.9)
P 		466.8
(-3)
P 		560.4
(-2.4)
P 		864
B 1291
(3)
P 		641.1
(-1.7)
P 		466.3
(-3)
P 		534.1
(-2.5)
P 		825
C 1190.1
(3)
P 		659.5
(-1.2)
P 		484.9
(-2.6)
P 		439
(-3)
P 		751
avr 1270.8
(3) 		639.7
(-1.7) 		472.7
(-3) 		511.2
(-2.7) 		798

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 804
1 2 3 4 5 6 range
A 1243.4
(3)
P 		882.1
(0.1)
P 		646.2
(-1.8)
P 		559.7
(-2.5)
P 		497.4
(-3)
P 		506.9
(-2.9)
P 		746
B 1163.2
(3)
P 		1012.4
(1.8)
P 		572.2
(-1.9)
P 		629.6
(-1.4)
P 		439.3
(-3)
P 		474.8
(-2.7)
P 		724
C 977.9
(2.7)
P 		1008.7
(3)
P 		654.6
(-0.9)
P 		682.4
(-0.6)
P 		469.1
(-3)
P 		490
(-2.8)
P 		540
avr 1128.2
(3) 		967.7
(1.5) 		624.3
(-1.6) 		623.9
(-1.6) 		468.6
(-3) 		490.6
(-2.8) 		660
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 411
1 2 3 4 range
A 484.7
(3)
P 		134.2
(-2.2)
P 		122
(-2.4)
P 		82
(-3)
P 		403
B 411.7
(3)
P 		158.3
(-2)
P 		108.1
(-3)
P 		113.8
(-2.9)
P 		304
C 394
(3)
P 		189.6
(-0.8)
P 		169
(-1.2)
P 		74
(-3)
P 		320
avr 430.1
(3) 		160.7
(-1.8) 		133
(-2.2) 		89.9
(-3) 		340

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 281
1 2 3 4 5 6 range
A 229.2
(0.3)
P 		313.7
(3)
P 		140.7
(-2.5)
P 		142
(-2.4)
P 		150.1
(-2.2)
P 		123.4
(-3)
P 		190
B 404.7
(3)
P 		337
(1.5)
P 		138.9
(-3)
P 		166.8
(-2.4)
P 		178.5
(-2.1)
P 		177
(-2.1)
P 		266
C 362.5
(3)
P 		307.8
(1.5)
P 		166.6
(-2.2)
P 		137.2
(-3)
P 		151.8
(-2.6)
P 		164
(-2.3)
P 		225
avr 332.1
(3) 		319.5
(2.6) 		148.7
(-3) 		148.7
(-3) 		160.1
(-2.6) 		154.8
(-2.8) 		183
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188084_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3177
Sequence Type Exemplar sequence
Representative Public ID K04B12.1 NCBI
Target Description K04B12.1 /REP_DB=WormBase Gene ID /WP=CE16224 /GEN=plx-2 /TR=O45657 /GB=CAB05755.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064600(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064600 NCBI Caenorhabditis elegans PLeXin family member (plx-2) (plx-2) mRNA, complete cds. 11/11 None
SNAP00000010720 ENSEMBL cdna:SNAP chromosome:CEL140:II:14417915:14424426:-1 11/11 None
GENEFINDER00000010725 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14417915:14424771:-1 11/11 None
K04B12.1 ENSEMBL cdna:known chromosome:CEL140:II:14417790:14424771:-1 gene:K04B12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14417911-14425504(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol plx-2
Ensembl K04B12.1
Entrez Gene 175101 Entrez gene
SwissProt O45657 EMBL-EBI
WormBase CE35575 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7275 development inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4872 receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05755 Hypothetical protein K04B12.1 [Caenorhabditis elegans] ref|NP_497001.3| PLeXin family member (plx-2) [Caenorhabditis elegans] 0.0
blast BAD36749.1 plexin [Caenorhabditis elegans] 0.0
blast CAE57926 Hypothetical protein CBG00979 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002909 EMBL-EBI Cell surface receptor IPT/TIG 4.2E-18
Pfam IPR002909 EMBL-EBI Cell surface receptor IPT/TIG 6.5E-23
Pfam IPR002909 EMBL-EBI Cell surface receptor IPT/TIG 1.3E-9
Pfam IPR002165 EMBL-EBI Plexin 8.7E-15
Pfam IPR002165 EMBL-EBI Plexin 1.1E-11
Pfam IPR002165 EMBL-EBI Plexin 2.7E-9
Pfam IPR002909 EMBL-EBI Cell surface receptor IPT/TIG 4.2E-18
Pfam IPR002909 EMBL-EBI Cell surface receptor IPT/TIG 6.5E-23
Pfam IPR002909 EMBL-EBI Cell surface receptor IPT/TIG 1.3E-9
Pfam IPR002165 EMBL-EBI Plexin 8.7E-15
Pfam IPR002165 EMBL-EBI Plexin 1.1E-11
Pfam IPR002165 EMBL-EBI Plexin 2.7E-9
Pfam IPR002909 EMBL-EBI Cell surface receptor IPT/TIG 4.2E-18
Pfam IPR002909 EMBL-EBI Cell surface receptor IPT/TIG 6.5E-23
Pfam IPR002909 EMBL-EBI Cell surface receptor IPT/TIG 1.6E-12
Pfam IPR002165 EMBL-EBI Plexin 8.7E-15
Pfam IPR002165 EMBL-EBI Plexin 1.1E-11
Pfam IPR002165 EMBL-EBI Plexin 2.7E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497001.3 1 1117-1139
K04B12.1 1 1117-1139
SNAP00000010720 1 1014-1036
GENEFINDER00000010725 1 1137-1159
Sequence
Target Sequence 
>C. ELEGANS:188084_S_AT
tacatgcacgattcaagctacccgccaattttaaaattcttctttgacattttggatcgt
gaagcttcagtgaacggagtttctgaaaatatttgtcagcaatggaaggctaatggctac
gttctcagagtttgggccaattttgttagaaatccgcagttggtgttcgatgttcctcat
tctatttccatggatgcaaacttgagtacagtagcgcaaactatgatggattgcttctca
ttctctgaacctgttctcggagcccattcaccgtcatctcgacttctttttgcaaaagac
gtggcgaggctccggcccctttcagtggacttattcaagcgagtcaaaaatagtcctcca
ctaggaatggatgagttgagaacggagttggtgaacatggccaatgatgtgtccacgtgc
aaaggatcttccctagcgctctccgaacttctgtcctgggttcgaggaaacggaattcgc
atttcccaactgttatcctcaaatgagcagttcagccaacaacgtttgcctcaaaaactc
tcacaagttctccatgtttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACATGCACGATTCAAGCTACCCGC 542 643 4825 Antisense
GGCTAATGGCTACGTTCTCAGAGTT 557 537 4932 Antisense
GCAGTTGGTGTTCGATGTTCCTCAT 232 313 4980 Antisense
GTTCCTCATTCTATTTCCATGGATG 608 441 4996 Antisense
TGATGGATTGCTTCTCATTCTCTGA 348 567 5048 Antisense
CATTCTCTGAACCTGTTCTCGGAGC 243 217 5063 Antisense
GTCATCTCGACTTCTTTTTGCAAAA 504 467 5097 Antisense
GTCCACGTGCAAAGGATCTTCCCTA 354 475 5235 Antisense
GAATTCGCATTTCCCAACTGTTATC 222 325 5297 Antisense
TTCAGCCAACAACGTTTGCCTCAAA 60 687 5335 Antisense
ACTCTCACAAGTTCTCCATGTTTGC 581 99 5361 Antisense
Sequence Source Affymetrix Proprietary Database