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[188083_at]

Description C39E6.1 /REP_DB=WormBase Gene ID /WP=CE06937 /GEN=lon-2 /TR=Q18530 /GB=AAA93415.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 81      4grp_high_8_8 > 57      6grp_highest_nonorm > 90      6grp_total > 82      4grp_total > 62      6grp_highest_sub > 05      6grp_cgc > 87      6grp_high1_sub > 04      6grp_cgc_sub > 05      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 214.7
(3)
P 		190.2
(1.5)
P 		187.1
(1.3)
P 		116.6
(-3)
P 		98
B 207.1
(3)
P 		151.3
(0.1)
P 		202.1
(2.7)
P 		90.6
(-3)
P 		117
C 272.9
(3)
P 		142.5
(-1.3)
P 		198.2
(0.5)
P 		90.3
(-3)
A 		183
avr 231.6
(3) 		161.3
(-0.2) 		195.8
(1.4) 		99.2
(-3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 113.6
(-3)
P 		157.8
(-0.7)
P 		180.4
(0.5)
P 		194.2
(1.2)
P 		229.5
(3)
P 		163.2
(-0.4)
P 		116
B 141.7
(-1.5)
P 		149.8
(-1.1)
P 		161.6
(-0.6)
P 		228.4
(2.4)
P 		241.3
(3)
P 		107.3
(-3)
P 		134
C 138.8
(-2)
P 		161.5
(-0.8)
P 		146.3
(-1.6)
P 		234.4
(3)
P 		221.3
(2.3)
P 		120.7
(-3)
P 		114
avr 131.4
(-2.9) 		156.4
(-1.4) 		162.8
(-1.1) 		219
(2.3) 		230.7
(3) 		130.4
(-3) 		100
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 78.2
(3)
P 		41.3
(-0.6)
P 		48.9
(0.1)
P 		17.1
(-3)
P 		61
B 66
(3)
P 		37.4
(-0.7)
P 		46.8
(0.5)
P 		19.3
(-3)
P 		47
C 90.3
(3)
P 		41
(-0.9)
P 		69.1
(1.3)
P 		15.2
(-3)
A 		75
avr 78.2
(3) 		39.9
(-0.8) 		54.9
(0.7) 		17.2
(-3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 20.9
(-3)
P 		56.1
(1.4)
P 		39.3
(-0.7)
P 		49.3
(0.5)
P 		69.2
(3)
P 		39.7
(-0.7)
P 		48
B 49.3
(-2)
P 		49.9
(-1.9)
P 		39.2
(-3)
P 		60.5
(-0.8)
P 		98.1
(3)
P 		40
(-2.9)
P 		59
C 51.4
(-0.5)
P 		49.3
(-0.9)
P 		37.2
(-3)
P 		47.1
(-1.3)
P 		71.6
(3)
P 		40.4
(-2.4)
P 		34
avr 40.5
(-2.7) 		51.8
(-1.1) 		38.6
(-3) 		52.3
(-1) 		79.6
(3) 		40
(-2.8) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188083_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16236
Sequence Type Exemplar sequence
Representative Public ID C39E6.1 NCBI
Target Description C39E6.1 /REP_DB=WormBase Gene ID /WP=CE06937 /GEN=lon-2 /TR=Q18530 /GB=AAA93415.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076411(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076411 NCBI Caenorhabditis elegans LONg family member (lon-2) (lon-2) mRNA, complete cds. 9/11 None
GENEFINDER00000034203 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4739320:4749050:-1 9/11 None
C39E6.1 ENSEMBL cdna:known chromosome:CEL140:X:4738932:4749051:-1 gene:C39E6.1 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034195 5/11 Cross Hyb Matching Probes None
SNAP00000034196 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4746097-4749051(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol lon-2
Ensembl C39E6.1
Entrez Gene 180750 Entrez gene
SwissProt Q18530 EMBL-EBI
WormBase CE35426 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA93415 Long protein 2 [Caenorhabditis elegans] ref|NP_508812.3| LONg family member (lon-2) [Caenorhabditis elegans] 0.0
blast CAE68644 Hypothetical protein CBG14534 [Caenorhabditis briggsae] 0.0
blast CAE68643 Hypothetical protein CBG14533 [Caenorhabditis briggsae] 5.0E-29
Sequence
Target Sequence 
>C. ELEGANS:188083_AT
atttctactcgttgacatgcacaagcaacttatgaacgctcacaatttaacactttccca
tgagtgtcttcaagaatacgtgcatacattgccatgcaattgcacaatggctggaatcac
accttgccacacttcttgttcaaactcaatggaaaaatgctttgggaaattttctcgaga
gtgggcagccaaattgcatctgatgaggaatatgacgagtacgaagaagtcttttttgga
tgagtttttatcactcaagaaaaccatcttctctgtaattcgaattttcatcgaacgcaa
gtcatatgtctacgcggagcacgtgttcaactcgtgcggtccgcttggcgagatgatcat
tcatccatcaaagcactctgttcactttcagtcgccaggaccgttcgtttcccgaggaga
cggagccgtgagagaggtcagtttctgttgtcggcgtgctctttgtgcatcgcgcaccaa
ttgcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCTACTCGTTGACATGCACAAG 284 17 642 Antisense
GAACGCTCACAATTTAACACTTTCC 453 347 675 Antisense
ATGGCTGGAATCACACCTTGCCACA 276 53 748 Antisense
TTGCCACACTTCTTGTTCAAACTCA 26 703 765 Antisense
GAAAACCATCTTCTCTGTAATTCGA 419 353 900 Antisense
GCAAGTCATATGTCTACGCGGAGCA 606 321 938 Antisense
TACGCGGAGCACGTGTTCAACTCGT 23 649 952 Antisense
GTCCGCTTGGCGAGATGATCATTCA 65 475 980 Antisense
TCATCCATCAAAGCACTCTGTTCAC 79 623 1002 Antisense
GAGAGGTCAGTTTCTGTTGTCGGCG 682 395 1073 Antisense
TTGTGCATCGCGCACCAATTGCATA 527 707 1104 Antisense
Sequence Source Affymetrix Proprietary Database