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[188077_at]

Description T02C12.2 /REP_DB=WormBase Gene ID /WP=CE01062 /GEN=tbb-2 /TR=Q22092 /GB=CAA84674.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 94      4grp_highest_8_8 > 45      4grp_high_8_8 > 09      6grp_highest_nonorm > 72      6grp_total > 85      4grp_total > 23      6grp_highest_sub > In      6grp_high1_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 336.8
(1.8)
P 		239.8
(-2.8)
P 		234.5
(-3)
P 		362.3
(3)
P 		128
B 304.2
(3)
P 		238.5
(-2.1)
P 		245.1
(-1.6)
P 		226.8
(-3)
P 		77
C 344.6
(2.7)
P 		247.2
(-3)
P 		276.6
(-1.3)
P 		349.2
(3)
P 		102
avr 328.5
(3) 		241.8
(-3) 		252.1
(-2.3) 		312.8
(1.9) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 345
1 2 3 4 5 6 range
A 329.7
(-2.8)
P 		323.5
(-3)
P 		370.9
(-1.2)
P 		468.8
(2.4)
P 		416
(0.5)
P 		483.5
(3)
P 		160
B 279.3
(-3)
P 		333.1
(-2)
P 		425.2
(-0.3)
P 		403.9
(-0.7)
P 		477.1
(0.7)
P 		598.2
(3)
P 		319
C 253.5
(-3)
P 		370.3
(-0.3)
P 		354
(-0.7)
P 		512.4
(3)
P 		386.5
(0.1)
P 		488.5
(2.4)
P 		259
avr 287.5
(-3) 		342.3
(-1.6) 		383.4
(-0.6) 		461.7
(1.4) 		426.5
(0.5) 		523.4
(3) 		236
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 122.6
(3)
P 		52.1
(-3)
P 		61.3
(-2.2)
P 		53
(-2.9)
P 		71
B 97
(3)
P 		58.9
(-1.7)
P 		56.8
(-2)
P 		48.3
(-3)
P 		49
C 114.1
(3)
P 		71.1
(-1.7)
P 		96.4
(1.1)
P 		58.9
(-3)
P 		55
avr 111.2
(3) 		60.7
(-2.2) 		71.5
(-1.1) 		53.4
(-3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 162
1 2 3 4 5 6 range
A 60.8
(-3)
P 		115.1
(2)
P 		80.8
(-1.1)
P 		118.9
(2.4)
P 		125.5
(3)
P 		117.7
(2.3)
P 		65
B 97.2
(-3)
P 		110.9
(-2.3)
P 		103.2
(-2.7)
P 		107
(-2.5)
P 		193.9
(1.6)
P 		223.1
(3)
P 		126
C 93.9
(-2.7)
P 		113
(-1.1)
P 		90.1
(-3)
P 		103
(-1.9)
P 		125.1
(-0.1)
P 		163.5
(3)
P 		73
avr 84
(-3) 		113
(-0.9) 		91.4
(-2.5) 		109.6
(-1.2) 		148.2
(1.6) 		168.1
(3) 		84
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188077_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7285
Sequence Type Exemplar sequence
Representative Public ID T02C12.2 NCBI
Target Description T02C12.2 /REP_DB=WormBase Gene ID /WP=CE01062 /GEN=tbb-2 /TR=Q22092 /GB=CAA84674.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065406(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065406 NCBI Caenorhabditis elegans T02C12.2 (T02C12.2) mRNA, complete cds. 11/11 None
SNAP00000027336 ENSEMBL cdna:SNAP chromosome:CEL140:III:4020132:4021749:1 11/11 None
GENEFINDER00000027343 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4020132:4021749:1 11/11 None
T02C12.2 ENSEMBL cdna:known chromosome:CEL140:III:4020132:4021749:1 gene:T02C12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4020131-4021749(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T02C12.2
Entrez Gene 192054 Entrez gene
SwissProt Q22092 EMBL-EBI
WormBase CE01062 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA84674 Hypothetical protein T02C12.2 [Caenorhabditis elegans] ref|NP_497807.1| T02C12.2 [Caenorhabditis elegans] 0.0
blast CAE72882 Hypothetical protein CBG20195 [Caenorhabditis briggsae] 1.0E-153
blast CAE72882 Hypothetical protein CBG20195 [Caenorhabditis briggsae] 1.0E-150
blast CAE67622 Hypothetical protein CBG13174 [Caenorhabditis briggsae] 3.0E-27
blast CAE67622 Hypothetical protein CBG13174 [Caenorhabditis briggsae] 8.0E-27
Sequence
Target Sequence 
>C. ELEGANS:188077_AT
aatgcaaccgcagttcgatttccatcatcatttatatttgttcatgataccttttatgtg
gatatgccacccaatgcaattgacatttcacacccaatccgcaactttatgcttcaccgc
gagatttatgatccagtggaggcttgtagtatggaaggagtcagaattattgacctgaag
ctgcgtctagggcagccgtacatattccagcattctgggaattgtgaacatctactcgtt
tttcatgatttgcgacttcttcatgaatcggacccgtggggaatcgataaatatccattc
accttatacgagaagggaaatgaaaagaaatgtgatatttgtaaaaaagggcatgtggaa
ttcgtcgtcgaacgccacgagcttcttcccaacacctacacacacttctgcaggacatgc
ttccaggagttcaactatgtgcatggtgtcaagacgcattcattcattgcttggccgtat
aca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCAACCGCAGTTCGATTTCCAT 531 165 724 Antisense
TCACACCCAATCCGCAACTTTATGC 477 627 811 Antisense
AACTTTATGCTTCACCGCGAGATTT 235 139 826 Antisense
TTGACCTGAAGCTGCGTCTAGGGCA 468 685 893 Antisense
CTAGGGCAGCCGTACATATTCCAGC 478 225 910 Antisense
GAACATCTACTCGTTTTTCATGATT 327 351 949 Antisense
GCGACTTCTTCATGAATCGGACCCG 163 289 975 Antisense
GTGGAATTCGTCGTCGAACGCCACG 72 491 1078 Antisense
TACACACACTTCTGCAGGACATGCT 337 643 1120 Antisense
AGGACATGCTTCCAGGAGTTCAACT 639 55 1135 Antisense
TTCATTCATTGCTTGGCCGTATACA 154 683 1182 Antisense
Sequence Source Affymetrix Proprietary Database