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[188072_at]

Description F13A7.9 /REP_DB=WormBase Gene ID /WP=CE15814 /GEN=skr-11 /TR=O45357 /GB=CAB07579.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 16      6grp_cgc > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 9.5
(-3)
A 		10.9
(-2.9)
A 		9.4
(-3)
A 		115.4
(3)
A 		106
B 12.8
(-2.6)
A 		12.6
(-3)
A 		13.2
(-1.9)
A 		15.8
(3)
A 		3
C 10.1
(-2.6)
A 		37.3
(1.6)
A 		45.9
(3)
A 		7.7
(-3)
A 		38
avr 10.8
(-3) 		20.3
(-1.4) 		22.8
(-1) 		46.3
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 11.3
(-2.3)
A 		10.3
(-2.4)
A 		10.2
(-2.4)
A 		5.6
(-3)
A 		55.5
(3)
A 		18.4
(-1.5)
A 		50
B 8.6
(-3)
A 		51.8
(3)
A 		8.7
(-3)
A 		10.5
(-2.7)
A 		14.6
(-2.2)
A 		24.6
(-0.8)
A 		43
C 27.5
(-1.3)
A 		34.1
(-0.8)
A 		14.2
(-2.4)
A 		7.6
(-3)
A 		43.3
(0)
A 		78.4
(3)
A 		71
avr 15.8
(-1.5) 		32.1
(1.5) 		11
(-2.4) 		7.9
(-3) 		37.8
(2.5) 		40.5
(3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 3.5
(-2.5)
A 		2.4
(-3)
A 		2.5
(-3)
A 		16.9
(3)
A 		15
B 4.1
(3)
A 		3.1
(-3)
A 		3.1
(-3)
A 		3.4
(-1.2)
A 		1
C 3.4
(-2.1)
A 		10.7
(0.8)
A 		16
(3)
A 		1.3
(-3)
A 		15
avr 3.7
(-3) 		5.4
(-0.1) 		7.2
(3) 		7.2
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 2.1
(-2.7)
A 		3.7
(-2.1)
A 		2.2
(-2.7)
A 		1.4
(-3)
A 		16.7
(3)
A 		4.5
(-1.8)
A 		15
B 3
(-2.6)
A 		17.2
(3)
A 		2.1
(-3)
A 		2.8
(-2.7)
A 		5.9
(-1.5)
A 		9.2
(-0.2)
A 		15
C 10.2
(-0.9)
A 		10.4
(-0.8)
A 		3.6
(-2.5)
A 		1.5
(-3)
A 		14
(0)
A 		26.2
(3)
A 		25
avr 5.1
(-1.3) 		10.4
(1.5) 		2.6
(-2.6) 		1.9
(-3) 		12.2
(2.4) 		13.3
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188072_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14343
Sequence Type Exemplar sequence
Representative Public ID F13A7.9 NCBI
Target Description F13A7.9 /REP_DB=WormBase Gene ID /WP=CE15814 /GEN=skr-11 /TR=O45357 /GB=CAB07579.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074740(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074740 NCBI Caenorhabditis elegans SKp1 Related (ubiquitin ligase complex component) family member (skr-11) (skr-11) mRNA, complete cds. 11/11 None
F13A7.9 ENSEMBL cdna:known chromosome:CEL140:V:16391824:16392448:-1 gene:F13A7.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025226 8/11 Cross Hyb Matching Probes None
GENEFINDER00000025233 5/11 Cross Hyb Matching Probes None
GENEFINDER00000025235 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16391823-16392448(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol skr-11
Ensembl F13A7.9
Entrez Gene 191764 Entrez gene
SwissProt O45357 EMBL-EBI
WormBase CE15814 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07579 Hypothetical protein F13A7.9 [Caenorhabditis elegans] ref|NP_507141.1| SKp1 Related (ubiquitin ligase complex component) family member (skr-11) [Caenorhabditis elegans] 2.0E-81
blast NP_503044 SKp1 Related (ubiquitin ligase complex component) family member (skr-8) [Caenorhabditis elegans] gb|AAK77211.1| Skp1 related (ubiquitin ligase complex component) protein 8 [Caenorhabditis elegans] gb|AAL34098.1| SKR-8 [Caenorhabditis elegans] 2.0E-44
blast CAB54358 Hypothetical protein Y105C5B.13 [Caenorhabditis elegans] ref|NP_502902.1| SKp1 Related (ubiquitin ligase complex component) family member (skr-10) [Caenorhabditis elegans] gb|AAL34100.1| SKR-10 [Caenorhabditis elegans] 1.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR001232 EMBL-EBI SKP1 component 1.4E-45
Pfam IPR001232 EMBL-EBI SKP1 component 5.1E-27
Sequence
Target Sequence 
>C. ELEGANS:188072_AT
gattgtgctcaacgatgtgatttctaggcgtgctcctgaggatagtgcgccaatggctcc
aattccagttgaaaaggtcaccggagacatcctgaacatggtcatcaagtggtgtgagca
acgcaaagaagacgagcttccagttgatgatggcagtattccaaagaaaatcgataaaat
cgatgttccccaatgggatgccgacttcttgaaaatcagcagcgatgtgctcttcgactt
gattgttgcctgcaacgaacttgatgtgcctggattgatgaattatggatgcaagatggt
tgccgacatggctgccggaaagtctcctgaagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTGTGCTCAACGATGTGATTTCT 149 435 141 Antisense
GATTTCTAGGCGTGCTCCTGAGGAT 39 427 159 Antisense
TGAGGATAGTGCGCCAATGGCTCCA 681 567 177 Antisense
AAAGGTCACCGGAGACATCCTGAAC 135 65 213 Antisense
GACATCCTGAACATGGTCATCAAGT 530 369 226 Antisense
GATAAAATCGATGTTCCCCAATGGG 482 421 313 Antisense
CCCAATGGGATGCCGACTTCTTGAA 212 257 329 Antisense
TCAGCAGCGATGTGCTCTTCGACTT 703 623 356 Antisense
TTGCCTGCAACGAACTTGATGTGCC 527 701 386 Antisense
GTTGCCGACATGGCTGCCGGAAAGT 677 439 439 Antisense
GGCTGCCGGAAAGTCTCCTGAAGAT 30 541 450 Antisense
Sequence Source Affymetrix Proprietary Database