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[188071_s_at]

Description F11D5.3 /REP_DB=WormBase Gene ID /WP=CE04370 /CHR=X /FEA=Sanger Annotation /DEF=tyrosine kinase (ST.LOUIS) protein_id:AAF99907.1
Cluster 6grp_total > 37      4grp_total > 46      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 264.2
(3)
P 		118.5
(-2.9)
A 		116.8
(-3)
A 		134.9
(-2.3)
A 		147
B 199.1
(3)
P 		137.3
(-1.3)
A 		112.1
(-3)
A 		115.1
(-2.8)
A 		87
C 234.6
(3)
P 		140.7
(-1)
A 		93.4
(-3)
A 		95.4
(-2.9)
A 		141
avr 232.6
(3) 		132.2
(-1.8) 		107.4
(-3) 		115.1
(-2.6) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 198
1 2 3 4 5 6 range
A 281.9
(3)
P 		235
(1.5)
P 		111.2
(-2.5)
P 		200.4
(0.4)
A 		95.1
(-3)
A 		208.6
(0.6)
P 		187
B 293.4
(3)
P 		215.7
(0.3)
P 		121.6
(-3)
A 		149
(-2)
A 		133.4
(-2.6)
M 		173.1
(-1.2)
P 		172
C 234.5
(3)
P 		185.8
(0.2)
P 		167.9
(-0.8)
A 		128.8
(-3)
A 		181.2
(-0)
A 		214.8
(1.9)
P 		106
avr 269.9
(3) 		212.2
(0.5) 		133.6
(-3) 		159.4
(-1.9) 		136.6
(-2.9) 		198.8
(-0.1) 		136
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 96.2
(3)
P 		25.7
(-2.5)
A 		30.5
(-2.2)
A 		19.7
(-3)
A 		77
B 63.5
(3)
P 		33.9
(-1.6)
A 		26
(-2.8)
A 		24.5
(-3)
A 		39
C 77.7
(3)
P 		40.5
(-0.6)
A 		32.5
(-1.4)
A 		16.1
(-3)
A 		62
avr 79.1
(3) 		33.4
(-1.6) 		29.7
(-2) 		20.1
(-3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 52
(-0.2)
P 		83.6
(3)
P 		24.2
(-3)
P 		50.8
(-0.3)
A 		28.7
(-2.5)
A 		50.8
(-0.3)
P 		59
B 102.1
(3)
P 		71.8
(0.5)
P 		29.5
(-3)
A 		39.5
(-2.2)
A 		54.2
(-1)
M 		64.6
(-0.1)
P 		73
C 86.9
(3)
P 		56.7
(0)
P 		42.7
(-1.3)
A 		25.9
(-3)
A 		58.6
(0.2)
A 		71.9
(1.5)
P 		61
avr 80.3
(3) 		70.7
(1.8) 		32.1
(-3) 		38.7
(-2.2) 		47.2
(-1.1) 		62.4
(0.8) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188071_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18281
Sequence Type Exemplar sequence
Representative Public ID F11D5.3 NCBI
Target Description F11D5.3 /REP_DB=WormBase Gene ID /WP=CE04370 /CHR=X /FEA=Sanger Annotation /DEF=tyrosine kinase (ST.LOUIS) protein_id:AAF99907.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076171(11), NM_076172(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076171 NCBI Caenorhabditis elegans F11D5.3a (F11D5.3) mRNA, complete cds. 11/11 None
NM_076172 NCBI Caenorhabditis elegans F11D5.3b (F11D5.3) mRNA, complete cds. 11/11 None
GENEFINDER00000035573 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3317868:3323952:1 11/11 None
SNAP00000035569 ENSEMBL cdna:SNAP chromosome:CEL140:X:3321131:3323952:1 11/11 None
F11D5.3a ENSEMBL cdna:known chromosome:CEL140:X:3315310:3324217:1 gene:F11D5.3 11/11 None
F11D5.3b.2 ENSEMBL cdna:known chromosome:CEL140:X:3317656:3323952:1 gene:F11D5.3 11/11 None
F11D5.3b.1 ENSEMBL cdna:known chromosome:CEL140:X:3317845:3323952:1 gene:F11D5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3317836-3323953(+) 100.0 100.0
Public Domain and Genome References
Ensembl F11D5.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508572 F11D5.3a [Caenorhabditis elegans] gb|AAK68319.1| Hypothetical protein F11D5.3a [Caenorhabditis elegans] 0.0
blast NP_508573 F11D5.3b [Caenorhabditis elegans] gb|AAK68320.1| Hypothetical protein F11D5.3b [Caenorhabditis elegans] 0.0
blast T16031 hypothetical protein F11D5.3 - Caenorhabditis elegans 0.0
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 1.0E-13
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 9.0E-14
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 8.0E-14
hanks 3.1.5 CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; Cdk6 3.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR000421 EMBL-EBI Coagulation factor 5/8 type C domain (FA58C) 6.9E-52
Pfam IPR000719 EMBL-EBI Protein kinase 1.5E-67
Pfam IPR000421 EMBL-EBI Coagulation factor 5/8 type C domain (FA58C) 1.7E-47
Pfam IPR000719 EMBL-EBI Protein kinase 1.5E-67
Pfam IPR000421 EMBL-EBI Coagulation factor 5/8 type C domain (FA58C) 1.3E-22
Pfam IPR000719 EMBL-EBI Protein kinase 1.5E-67
Pfam IPR000719 EMBL-EBI Protein kinase 1.5E-67
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508572.1 1 384-406
NP_508573.1 1 354-376
F11D5.3a 1 384-406
F11D5.3b.2 1 354-376
F11D5.3b.1 1 354-376
GENEFINDER00000035573 1 329-351
SNAP00000035569 1 211-233
Sequence
Target Sequence 
>C. ELEGANS:188071_S_AT
ctcaatttgcacacagcttgccgcaggacttgcctatttggaatcatgtaattttgtgca
tagagatattgctgctcgaaattgccttgttgacggagaaggcaatgtaaaaattgccga
tttcggaatggcccgatctctttattctcaagaatattacaaagttgagggaaagtttgt
gctcccgattcgctggatggcatgggaagctttgctactcggcaaattttccactgccag
tgatgtttggggattcggagttaccatgtgggagatcttctcgctgtgctccgaaaaacc
atactccgatatgacagatgatgatgtggtggagaatcttcagagcatgagctctactgg
atcattaaagcaagttctttcccgaccaaggatgtgtccatcaaagttgtacaacgagca
aattcttccgtgctggaactatgagagcagtcgccgacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCAATTTGCACACAGCTTGCCGCA 358 227 1863 Antisense
TGCTGCTCGAAATTGCCTTGTTGAC 26 583 1932 Antisense
GCCGATTTCGGAATGGCCCGATCTC 622 279 1978 Antisense
GCCCGATCTCTTTATTCTCAAGAAT 699 285 1993 Antisense
GGGAAAGTTTGTGCTCCCGATTCGC 215 493 2031 Antisense
CCCGATTCGCTGGATGGCATGGGAA 389 261 2046 Antisense
GGCATGGGAAGCTTTGCTACTCGGC 253 537 2061 Antisense
GCTACTCGGCAAATTTTCCACTGCC 329 303 2076 Antisense
GTTCTTTCCCGACCAAGGATGTGTC 61 433 2236 Antisense
AACGAGCAAATTCTTCCGTGCTGGA 395 145 2275 Antisense
GGAACTATGAGAGCAGTCGCCGACC 521 527 2297 Antisense
Sequence Source Affymetrix Proprietary Database