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[188069_s_at]

Description C25G4.5 /REP_DB=WormBase Gene ID /WP=CE08398 /GEN=dpy-26 /TR=Q17373 /GB=CAA94575.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 46      4grp_highest_8_8 > 50      4grp_high_8_8 > 32      6grp_highest_nonorm > 82      6grp_total > 46      4grp_total > 47      6grp_highest_sub > Cu      6grp_cgc > 26      6grp_high1_sub > Cu      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 390
1 2 3 4 range
A 560.1
(3)
P 		265.1
(-1.5)
P 		221.8
(-2.2)
P 		169.9
(-3)
P 		390
B 548.4
(3)
P 		277.6
(-2.5)
P 		252.8
(-3)
P 		265.3
(-2.7)
P 		296
C 542.7
(3)
P 		268.4
(-3)
P 		275.3
(-2.8)
P 		302.2
(-2.3)
P 		274
avr 550.4
(3) 		270.4
(-2.5) 		250
(-2.9) 		245.8
(-3) 		305

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 249
1 2 3 4 5 6 range
A 343.4
(-0.4)
P 		441.6
(2.4)
P 		292.2
(-1.9)
P 		417.9
(1.7)
P 		251.9
(-3)
P 		462.8
(3)
P 		211
B 462.6
(3)
P 		382.5
(0.8)
P 		397.5
(1.2)
P 		349.5
(-0.1)
P 		242.8
(-3)
P 		395.2
(1.2)
P 		220
C 491.8
(3)
P 		392.5
(-0.5)
P 		379.1
(-1)
P 		320.8
(-3)
P 		324.3
(-2.9)
P 		442.6
(1.3)
P 		171
avr 432.6
(3) 		405.5
(2) 		356.3
(0.1) 		362.7
(0.4) 		273
(-3) 		433.5
(3) 		161
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 179
1 2 3 4 range
A 203.9
(3)
P 		57.6
(-1.9)
P 		58
(-1.9)
P 		24.9
(-3)
P 		179
B 174.9
(3)
P 		68.6
(-2.4)
P 		58.6
(-2.9)
P 		56.5
(-3)
P 		118
C 179.7
(3)
P 		77.2
(-1.8)
P 		95.9
(-0.9)
P 		51
(-3)
P 		129
avr 186.2
(3) 		67.8
(-2) 		70.8
(-1.9) 		44.1
(-3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 63.3
(-3)
P 		157
(3)
P 		63.6
(-3)
P 		106
(-0.3)
P 		76
(-2.2)
P 		112.7
(0.2)
P 		94
B 160.9
(3)
P 		127.3
(0)
P 		96.5
(-2.7)
P 		92.6
(-3)
P 		98.7
(-2.5)
P 		147.4
(1.8)
P 		68
C 182.3
(3)
P 		119.8
(-0.2)
P 		96.5
(-1.4)
P 		64.5
(-3)
P 		104.9
(-0.9)
P 		148.2
(1.3)
P 		118
avr 135.5
(2.9) 		134.7
(2.8) 		85.5
(-3) 		87.7
(-2.7) 		93.2
(-2.1) 		136.1
(3) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188069_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9921
Sequence Type Exemplar sequence
Representative Public ID C25G4.5 NCBI
Target Description C25G4.5 /REP_DB=WormBase Gene ID /WP=CE08398 /GEN=dpy-26 /TR=Q17373 /GB=CAA94575.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069977(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069977 NCBI Caenorhabditis elegans DumPY : shorter than wild-type family member (dpy-26) (dpy-26) mRNA, complete cds. 11/11 None
SNAP00000033050 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12446173:12451261:-1 11/11 None
GENEFINDER00000033064 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12446173:12451261:-1 11/11 None
C25G4.5 ENSEMBL cdna:known chromosome:CEL140:IV:12445957:12451261:-1 gene:C25G4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12446178-12451267(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol dpy-26
Ensembl C25G4.5
Entrez Gene 178196 Entrez gene
SwissProt Q17373 EMBL-EBI
WormBase CE08398 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
794 condensed nuclear chromosome inferred from direct assay QuickGO AmiGO
228 nuclear chromosome inferred from direct assay QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94575 Hypothetical protein C25G4.5 [Caenorhabditis elegans] ref|NP_502378.1| DumPY : shorter than wild-type family member (dpy-26) [Caenorhabditis elegans] gb|AAC47411.1| DPY-26 [Caenorhabditis elegans] 0.0
blast CAE59864 Hypothetical protein CBG03340 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:188069_S_AT
gcaacaccgacaatggaggccgacaaaacgttgacgtcagtgtttgactatagatcaccg
aacaaatcgaatcacgatgtgaacgaaacgatgaaggcactaacagagatgccagattat
caagcagcagatgagcgtcccaataatcaaccaactacatctacatatggaactgctaac
actgaaaatagaaaagtgcatataaatggatgccatacacttctttcgttggcactttca
atgccttccagaatgggagagactgttaggccctcgtctatcgtcagcttcctattgcat
attgccaatgaaaataacttgcaaattgttcaagatcgatcaaagcgatcctggatgtct
gatttcattgttctcaattcaagtgaaagcctaccacgtggtctgaaaatgggaagaatc
gaggatcaagacgagttctggaaacgaactcaagatccggacgccatcgagggtacggct
agcgatgcgaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAACACCGACAATGGAGGCCGACA 293 319 3187 Antisense
GAGGCCGACAAAACGTTGACGTCAG 149 405 3202 Antisense
TGAGCGTCCCAATAATCAACCAACT 538 567 3318 Antisense
AAATGGATGCCATACACTTCTTTCG 254 121 3390 Antisense
ACTTCTTTCGTTGGCACTTTCAATG 594 103 3405 Antisense
GCACTTTCAATGCCTTCCAGAATGG 64 317 3418 Antisense
ATGGGAGAGACTGTTAGGCCCTCGT 292 49 3439 Antisense
AGCGATCCTGGATGTCTGATTTCAT 107 83 3530 Antisense
AAGTGAAAGCCTACCACGTGGTCTG 667 157 3567 Antisense
GAAACGAACTCAAGATCCGGACGCC 657 357 3627 Antisense
CGAGGGTACGGCTAGCGATGCGAAT 691 249 3654 Antisense
Sequence Source Affymetrix Proprietary Database