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[188064_at] Globin

Description W01C9.5 /REP_DB=WormBase Gene ID /WP=CE02371 /TR=Q23117 /GB=CAA90269.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Globin
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 91      6grp_total > 39      4grp_total > 13      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 611
1 2 3 4 range
A 284.1
(-0.1)
P 		104.2
(-3)
A 		131
(-2.6)
M 		477.4
(3)
P 		373
B 295.7
(-0.8)
P 		149.1
(-2.2)
P 		72
(-3)
M 		682.8
(3)
P 		611
C 376.1
(0)
P 		187.9
(-2.1)
P 		107.5
(-3)
P 		642
(3)
P 		535
avr 318.6
(-0.4) 		147.1
(-2.5) 		103.5
(-3) 		600.7
(3) 		497

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 276.6
(3)
P 		253.4
(1.6)
P 		203.9
(-1.2)
P 		173.8
(-3)
P 		274.9
(2.9)
P 		215.7
(-0.6)
P 		103
B 258.4
(3)
P 		160.7
(-3)
P 		185.3
(-1.5)
P 		169.8
(-2.4)
P 		248.3
(2.4)
P 		244.5
(2.1)
P 		98
C 210.5
(0.5)
P 		193.1
(-1.5)
P 		179.5
(-3)
P 		230.2
(2.6)
P 		213.8
(0.8)
P 		233.4
(3)
P 		54
avr 248.5
(3) 		202.4
(-1.7) 		189.6
(-3) 		191.3
(-2.8) 		245.7
(2.7) 		231.2
(1.2) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 103.4
(3)
P 		22.6
(-3)
A 		34.3
(-2.1)
M 		69.9
(0.5)
P 		81
B 94.3
(0.6)
P 		36.8
(-2.1)
P 		16.7
(-3)
M 		145.5
(3)
P 		129
C 124.5
(3)
P 		54
(-1.9)
P 		37.5
(-3)
P 		108.2
(1.9)
P 		87
avr 107.4
(3) 		37.8
(-2.4) 		29.5
(-3) 		107.9
(3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 51
(-2.1)
P 		90.1
(3)
P 		44.4
(-3)
P 		44.1
(-3)
P 		83
(2.1)
P 		52.5
(-1.9)
P 		46
B 89.9
(1.8)
P 		53.5
(-2.1)
P 		45
(-3)
P 		45
(-3)
P 		100.9
(3)
P 		91.2
(2)
P 		56
C 78
(3)
P 		58.9
(-0.6)
P 		45.7
(-3)
P 		46.3
(-2.9)
P 		69.2
(1.4)
P 		78.1
(3)
P 		32
avr 73
(1.3) 		67.5
(0.4) 		45
(-3) 		45.1
(-3) 		84.4
(3) 		73.9
(1.4) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188064_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2912
Sequence Type Exemplar sequence
Representative Public ID W01C9.5 NCBI
Target Description W01C9.5 /REP_DB=WormBase Gene ID /WP=CE02371 /TR=Q23117 /GB=CAA90269.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Globin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063405(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063405 NCBI Caenorhabditis elegans W01C9.5 (Globin) mRNA, complete cds. 11/11 None
SNAP00000001842 ENSEMBL cdna:SNAP chromosome:CEL140:II:8547493:8548550:-1 11/11 None
GENEFINDER00000001846 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8547493:8552907:-1 11/11 None
W01C9.5 ENSEMBL cdna:known chromosome:CEL140:II:8547493:8548550:-1 gene:W01C9.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8547489-8548547(-) 100.0 100.0
Public Domain and Genome References
Gene Title Globin
Ensembl W01C9.5
Entrez Gene 189091 Entrez gene
SwissProt Q23117 EMBL-EBI
WormBase CE02371 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90269 Hypothetical protein W01C9.5 [Caenorhabditis elegans] ref|NP_495806.1| W01C9.5 [Caenorhabditis elegans] 1.0E-126
blast CAE57590 Hypothetical protein CBG00571 [Caenorhabditis briggsae] 1.0E-116
blast CAE67526 Hypothetical protein CBG13047 [Caenorhabditis briggsae] 4.0E-15
blast CAA19459 Hypothetical protein Y17G7B.6 [Caenorhabditis elegans] ref|NP_496559.1| Y17G7B.6 [Caenorhabditis elegans] 1.0E-14
Sequence
Target Sequence 
>C. ELEGANS:188064_AT
atgtgattccagtatgctctcaactaactccatctcaagtatcagttgttcgtcgttcat
ggagacatatcaacacaaaggggctcattattgtcctgacaagatgcttttcaagacttg
aatcaaattgtccaattgtttctcaatgcttccaatcagccacatattcattatcgacaa
atccaaacggagtacgtacagtagctgatcatgcgaaatatcttcttcagcttctggata
aaatcattgaaggagatgtggattcggaatttcttcgtgaaattggcgccaatcatgtgt
gtctgaaacacgaaagtggattcagcacccaagaatgggatcgattccaagagataatgg
ttgaagtgattctgaagcaggacggagtgaaacaaagtaaagaaacaagccgagcatgga
gactacttatttgctcattcattgaacttattcgtgatggattcgatgctcaagttcgtc
aattcagaagaaaacattcattcaatgcacatgttcaatattttgaaaatattgagaagc
gagtcggtgtctgccccagtcgaaaaatctcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTGATTCCAGTATGCTCTCAACT 607 49 59 Antisense
CTCTCAACTAACTCCATCTCAAGTA 463 229 75 Antisense
AAGGGGCTCATTATTGTCCTGACAA 702 157 136 Antisense
GTTTCTCAATGCTTCCAATCAGCCA 290 451 196 Antisense
ATCAGCCACATATTCATTATCGACA 92 29 213 Antisense
CATGCGAAATATCTTCTTCAGCTTC 365 211 268 Antisense
ATTGGCGCCAATCATGTGTGTCTGA 385 3 340 Antisense
GGAGACTACTTATTTGCTCATTCAT 525 519 476 Antisense
GGATTCGATGCTCAAGTTCGTCAAT 251 509 517 Antisense
TTGAGAAGCGAGTCGGTGTCTGCCC 520 705 590 Antisense
TCTGCCCCAGTCGAAAAATCTCATT 74 609 608 Antisense
Sequence Source Affymetrix Proprietary Database