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[188063_s_at] esterase

Description M28.6 /REP_DB=WormBase Gene ID /WP=CE02284 /TR=Q21569 /GB=CAA90128.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=esterase
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 60      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 64      6grp_total > 70      4grp_total > 39      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 789
1 2 3 4 range
A 1135.9
(3)
P 		550.9
(-3)
P 		579.9
(-2.7)
P 		743.1
(-1)
P 		585
B 1233.9
(3)
P 		488.6
(-2.7)
P 		444.8
(-3)
P 		869.2
(0.2)
P 		789
C 1232.2
(3)
P 		547.9
(-3)
P 		642
(-2.2)
P 		678.8
(-1.9)
P 		684
avr 1200.7
(3) 		529.1
(-3) 		555.6
(-2.8) 		763.7
(-0.9) 		672

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 422
1 2 3 4 5 6 range
A 891.3
(1.2)
P 		800
(-0.1)
P 		787.6
(-0.3)
P 		1018
(3)
P 		817.1
(0.1)
P 		596.3
(-3)
P 		422
B 794.4
(0.4)
P 		673.2
(-1.9)
P 		873.1
(1.8)
P 		938.8
(3)
P 		676.9
(-1.8)
P 		611
(-3)
P 		328
C 865.6
(2.2)
P 		718.8
(-3)
P 		834.1
(1.1)
P 		887.5
(3)
P 		762.3
(-1.5)
P 		839.4
(1.3)
P 		169
avr 850.4
(0.8) 		730.7
(-1.9) 		831.6
(0.4) 		948.1
(3) 		752.1
(-1.4) 		682.2
(-3) 		266
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 311
1 2 3 4 range
A 413.6
(3)
P 		119.6
(-2.8)
P 		151.6
(-2.2)
P 		108.8
(-3)
P 		305
B 393.5
(3)
P 		120.7
(-2.6)
P 		103.1
(-3)
P 		185.2
(-1.3)
P 		290
C 407.9
(3)
P 		157.5
(-2.1)
P 		223.8
(-0.8)
P 		114.5
(-3)
P 		293
avr 405
(3) 		132.6
(-3) 		159.5
(-2.4) 		136.2
(-2.9) 		272

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 176
1 2 3 4 5 6 range
A 164.3
(-2.2)
P 		284.5
(3)
P 		171.5
(-1.9)
P 		258.2
(1.9)
P 		246.6
(1.4)
P 		145.2
(-3)
P 		139
B 276.4
(3)
P 		224.1
(-1.9)
P 		212
(-3)
P 		248.7
(0.4)
P 		275
(2.9)
P 		227.8
(-1.5)
P 		64
C 320.9
(3)
P 		219.3
(-1.3)
P 		212.3
(-1.6)
P 		178.5
(-3)
P 		246.7
(-0.1)
P 		281
(1.3)
P 		142
avr 253.9
(2.8) 		242.6
(1.6) 		198.6
(-3) 		228.5
(0.1) 		256.1
(3) 		218
(-1) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188063_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2764
Sequence Type Exemplar sequence
Representative Public ID M28.6 NCBI
Target Description M28.6 /REP_DB=WormBase Gene ID /WP=CE02284 /TR=Q21569 /GB=CAA90128.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=esterase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063898(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063898 NCBI Caenorhabditis elegans M28.6 (esterase) mRNA, complete cds. 11/11 None
SNAP00000007406 ENSEMBL cdna:SNAP chromosome:CEL140:II:10652490:10657579:-1 11/11 None
GENEFINDER00000007412 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10648849:10657781:-1 11/11 None
M28.6 ENSEMBL cdna:known chromosome:CEL140:II:10652263:10657712:-1 gene:M28.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10652486-10657576(-) 98.46 100.0
Public Domain and Genome References
Gene Title esterase
Ensembl M28.6
Entrez Gene 174644 Entrez gene
SwissProt Q21569 EMBL-EBI
WormBase CE02284 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90128 Hypothetical protein M28.6 [Caenorhabditis elegans] ref|NP_496299.1| M28.6 [Caenorhabditis elegans] 0.0
blast CAE59629 Hypothetical protein CBG03042 [Caenorhabditis briggsae] 0.0
blast CAA90133 Hypothetical protein M28.7 [Caenorhabditis elegans] ref|NP_496298.1| NePHronophthisis (human kidney disease) homolog family member (nph-1) [Caenorhabditis elegans] sp|O17972|NPHP1_CAEEL Nephrocystin-1-like protein 0.0
blast CAE59630 Hypothetical protein CBG03043 [Caenorhabditis briggsae] 0.0
blast CAA88435 Hypothetical protein ZK945.1 [Caenorhabditis elegans] ref|NP_496176.1| ZK945.1 [Caenorhabditis elegans] sp|Q09621|YS81_CAEEL Hypothetical protein ZK945.1 in chromosome II 3.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR001466 EMBL-EBI Beta-lactamase 4.0E-71
Pfam IPR001452 EMBL-EBI SH3 7.9E-7
Pfam IPR001466 EMBL-EBI Beta-lactamase 5.3E-69
Sequence
Target Sequence 
>C. ELEGANS:188063_S_AT
gtctcagaacaacatcgtgtcgcccgtatcagtacaccaaatatgctcaatcgtcttgat
gagatgtggacggatgtccgtgttgtcaagtacatgaaatcattgttcaaattgatgacg
gatcatccactctcacacattgtcaaaaatccatcatggcttgaagcagtctccagatgt
acgatcaataatccagattatcatcgattggagcaagctgccgcacttggaatgggaaat
gctcgttctcttgcctcactttttgacaaggtaaatcgaggaaaacttctcaatcaggct
acactgaacacgataagcaaaccgttcgtcaacgagagtgatttcatttttgatgatact
gtcgccaagggacacggatttttccatttgcccattcatagagctgggactcaattcggc
ttcggacataccgggcacggatgccaaatggtcatcacagatctcaagaatcgagtgaca
attgcctacgtcacaaatgggttgaaaacgggactctacgacttgtgcaggacgtactgg
ggacttcagacttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTCAGAACAACATCGTGTCGCCC 692 469 715 Antisense
TGATGACGGATCATCCACTCTCACA 244 567 827 Antisense
GAAGCAGTCTCCAGATGTACGATCA 261 341 877 Antisense
ATCGATTGGAGCAAGCTGCCGCACT 705 35 917 Antisense
TTCTCTTGCCTCACTTTTTGACAAG 444 691 960 Antisense
AAAACTTCTCAATCAGGCTACACTG 47 131 996 Antisense
GGACACGGATTTTTCCATTTGCCCA 472 525 1084 Antisense
TAGAGCTGGGACTCAATTCGGCTTC 336 651 1113 Antisense
TCGGACATACCGGGCACGGATGCCA 584 605 1136 Antisense
AAAACGGGACTCTACGACTTGTGCA 409 131 1219 Antisense
GGACGTACTGGGGACTTCAGACTTC 639 509 1244 Antisense
Sequence Source Affymetrix Proprietary Database