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[188062_s_at]

Description K08D9.3 /REP_DB=WormBase Gene ID /WP=CE19983 /GEN=apx-1 /TR=Q9TXN4 /GB=AAC69353.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 47      4grp_total > 43      6grp_cgc > 27      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 98.7
(-1.6)
A 		131.2
(3)
A 		88.4
(-3)
A 		116.5
(0.9)
A 		43
B 97.5
(0.4)
A 		118.8
(2.8)
A 		120.2
(3)
A 		68.1
(-3)
A 		52
C 78.1
(-3)
A 		148.9
(3)
M 		94.4
(-1.6)
A 		101.6
(-1)
A 		71
avr 91.4
(-3) 		133
(3) 		101
(-1.6) 		95.4
(-2.4) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 92.4
(1.4)
A 		67.9
(-3)
A 		69.9
(-2.6)
A 		101.3
(3)
A 		85.3
(0.1)
A 		88.1
(0.6)
A 		33
B 80.9
(-0.2)
A 		86.9
(1.3)
A 		73.8
(-2.1)
A 		70.9
(-2.8)
A 		70.1
(-3)
A 		93.6
(3)
A 		24
C 85.4
(2)
A 		82.2
(1.5)
A 		92
(2.8)
A 		47.5
(-3)
A 		58.8
(-1.5)
A 		93.3
(3)
A 		46
avr 86.2
(1.4) 		79
(-0.8) 		78.6
(-0.9) 		73.2
(-2.5) 		71.4
(-3) 		91.7
(3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 35.9
(3)
A 		28.5
(0.6)
A 		23.1
(-1.1)
A 		17.1
(-3)
A 		19
B 31.1
(3)
A 		29.4
(2.4)
A 		27.9
(1.8)
A 		14.5
(-3)
A 		17
C 25.8
(-1)
A 		42.8
(3)
M 		32.9
(0.7)
A 		17.1
(-3)
A 		26
avr 30.9
(2.1) 		33.6
(3) 		28
(1.1) 		16.2
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 17
(-2)
A 		24.1
(2)
A 		15.2
(-3)
A 		25.7
(2.9)
A 		25.8
(3)
A 		21.4
(0.5)
A 		11
B 28.1
(0.6)
A 		28.9
(0.9)
A 		17.9
(-3)
A 		18.8
(-2.7)
A 		28.5
(0.7)
A 		34.9
(3)
A 		17
C 31.6
(3)
A 		25.1
(1.2)
A 		23.4
(0.8)
A 		9.6
(-3)
A 		19
(-0.4)
A 		31.2
(2.9)
A 		22
avr 25.6
(1.1) 		26
(1.3) 		18.8
(-2.6) 		18
(-3) 		24.4
(0.4) 		29.2
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188062_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15321
Sequence Type Exemplar sequence
Representative Public ID K08D9.3 NCBI
Target Description K08D9.3 /REP_DB=WormBase Gene ID /WP=CE19983 /GEN=apx-1 /TR=Q9TXN4 /GB=AAC69353.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071481(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071481 NCBI Caenorhabditis elegans Anterior Pharynx in eXcess family member (apx-1) (apx-1) mRNA, complete cds. 11/11 A 
SNAP00000017184 ENSEMBL cdna:SNAP chromosome:CEL140:V:3210056:3222276:1 11/11 None
GENEFINDER00000017191 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3218752:3222276:1 11/11 None
K08D9.3 ENSEMBL cdna:known chromosome:CEL140:V:3210018:3222979:1 gene:K08D9.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3210055-3222276(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol apx-1
Ensembl K08D9.3
Entrez Gene 178759 Entrez gene
SwissProt P41990 EMBL-EBI
WormBase CE30819 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7154 cell communication inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5185 neurohypophyseal hormone activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC69353 Anterior pharynx in excess protein 1 [Caenorhabditis elegans] ref|NP_503882.2| Anterior Pharynx in eXcess family member (apx-1) [Caenorhabditis elegans] sp|P41990|APX1_CAEEL Anterior pharynx in excess protein 1 precursor gb|AAA17738.1| APX-1 0.0
blast D88991 protein apx-1 [imported] - Caenorhabditis elegans 0.0
blast CAE74150 Hypothetical protein CBG21821 [Caenorhabditis briggsae] 1.0E-153
blast D88991 protein apx-1 [imported] - Caenorhabditis elegans 8.0E-97
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 4.0E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 3.8E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 3.1E-7
Pfam IPR001774 EMBL-EBI Delta/Serrate/lag-2 (DSL) protein 2.5E-36
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503882.2 1 392-414
K08D9.3 1 392-414
SNAP00000017184 1 392-414
GENEFINDER00000017191 1 105-127
Sequence
Target Sequence 
>C. ELEGANS:188062_S_AT
caagtgccgtcgcggattttcgggaaaattctgtgaaattggaaatcacggggattgctc
ggcgatgcggtgctccgccggagagacgtgccaaattagtggagattttgcgatttgtgt
ggaaaatgatgagctactactgacaactaataagcctgctgaaacgacgaaaagcgttga
aaaatggagagaaccccgaaaaacggcgaacgacgagcaagcctcggatgagcttcaact
tcggctgatcgccgcaatttgtgtgctcttttgtgtgatcggtctcgccttggtcagctt
tttcttctacatgcactcattctccaagtggaaacatccatcgtcacagcaggcaggagg
aagcacaattcttccaacaacaacatcaattccaatgtctacaacgtcttcgggaactgg
atctcctgtttataaagtgtgcataatcgattcggagcaccgcggaaacgcgccaggaag
ctcatcagattccgaacccgatcaccactgtccgccgccgcaccgacattctccaccgcc
tgcctactcgagtctcgtcctgtacaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGTGCCGTCGCGGATTTTCGGGA 164 183 942 Antisense
AAATCACGGGGATTGCTCGGCGATG 290 117 984 Antisense
ATGAGCTTCAACTTCGGCTGATCGC 609 45 1169 Antisense
GATCGCCGCAATTTGTGTGCTCTTT 518 417 1188 Antisense
TGGTCAGCTTTTTCTTCTACATGCA 110 553 1232 Antisense
TCTACATGCACTCATTCTCCAAGTG 666 611 1247 Antisense
ATGTCTACAACGTCTTCGGGAACTG 112 47 1336 Antisense
TCGGGAACTGGATCTCCTGTTTATA 282 605 1351 Antisense
CGATTCGGAGCACCGCGGAAACGCG 196 247 1389 Antisense
GGAAGCTCATCAGATTCCGAACCCG 106 531 1417 Antisense
TACTCGAGTCTCGTCCTGTACAAAA 280 647 1486 Antisense
Sequence Source Affymetrix Proprietary Database