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[188061_s_at]

Description F52E4.6 /REP_DB=WormBase Gene ID /WP=CE07273 /GEN=wrt-2 /TR=Q20677 /GB=AAB54032.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 33      6grp_highest_nonorm > 33      6grp_total > 20      4grp_total > 49      6grp_highest_sub > 02      6grp_cgc > 63      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3966
1 2 3 4 range
A 117
(-3)
A 		3991.9
(3)
P 		3500
(2.2)
P 		291.5
(-2.7)
A 		3875
B 26.4
(-3)
A 		3898.1
(3)
P 		3298
(2.1)
P 		201
(-2.7)
A 		3872
C 150.8
(-3)
A 		3683.1
(3)
P 		3460.5
(2.6)
P 		249.6
(-2.8)
A 		3532
avr 98.1
(-3) 		3857.7
(3) 		3419.5
(2.3) 		247.4
(-2.8) 		3760

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2384
1 2 3 4 5 6 range
A 1105.5
(-1.7)
P 		2808.9
(3)
P 		1541.5
(-0.5)
P 		1798.2
(0.2)
P 		1332.9
(-1)
P 		616.8
(-3)
P 		2192
B 1021.4
(-1.4)
P 		2575.3
(3)
P 		1734
(0.6)
P 		1777.9
(0.7)
P 		1336.8
(-0.5)
P 		461.4
(-3)
P 		2114
C 1019.3
(-1.2)
P 		2424.1
(3)
P 		1901.9
(1.4)
P 		1555.1
(0.4)
P 		1509.4
(0.3)
P 		425
(-3)
P 		1999
avr 1048.7
(-1.4) 		2602.8
(3) 		1725.8
(0.5) 		1710.4
(0.5) 		1393
(-0.5) 		501.1
(-3) 		2102
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1198
1 2 3 4 range
A 42.6
(-3)
A 		866.5
(2.7)
P 		915
(3)
P 		42.7
(-3)
A 		872
B 8.4
(-3)
A 		962.7
(3)
P 		764.2
(1.8)
P 		42.8
(-2.8)
A 		954
C 49.9
(-3)
A 		1058.9
(2.2)
P 		1206.1
(3)
P 		42.1
(-3)
A 		1164
avr 33.6
(-3) 		962.7
(3) 		961.8
(3) 		42.5
(-2.9) 		929

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 857
1 2 3 4 5 6 range
A 203.8
(-2.6)
P 		999
(3)
P 		335.7
(-1.7)
P 		456.1
(-0.8)
P 		402.2
(-1.2)
P 		150.2
(-3)
P 		849
B 355.4
(-1.4)
P 		857.2
(3)
P 		421.1
(-0.8)
P 		470.9
(-0.4)
P 		543.1
(0.2)
P 		172.1
(-3)
P 		685
C 377.8
(-0.6)
P 		739.7
(3)
P 		484.1
(0.4)
P 		312.7
(-1.3)
P 		488.4
(0.5)
P 		142.3
(-3)
P 		597
avr 312.3
(-1.7) 		865.3
(3) 		413.6
(-0.8) 		413.2
(-0.8) 		477.9
(-0.3) 		154.9
(-3) 		710
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188061_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18480
Sequence Type Exemplar sequence
Representative Public ID F52E4.6 NCBI
Target Description F52E4.6 /REP_DB=WormBase Gene ID /WP=CE07273 /GEN=wrt-2 /TR=Q20677 /GB=AAB54032.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076128(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076128 NCBI Caenorhabditis elegans WaRThog (hedgehog-like family) family member (wrt-2) (wrt-2) mRNA, complete cds. 11/11 None
SNAP00000026386 ENSEMBL cdna:SNAP chromosome:CEL140:X:3092505:3094287:-1 11/11 None
GENEFINDER00000026391 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3092505:3094287:-1 11/11 None
F52E4.6 ENSEMBL cdna:known chromosome:CEL140:X:3092392:3094363:-1 gene:F52E4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3092504-3094287(-) 94.8 100.0
Public Domain and Genome References
Gene Title
Gene Symbol wrt-2
Ensembl F52E4.6
Entrez Gene 180597 Entrez gene
SwissProt Q20677 EMBL-EBI
WormBase CE07273 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB54032 Warthog (hedgehog-like family) protein 2 [Caenorhabditis elegans] ref|NP_508529.1| WaRThog (hedgehog-like family) family member (wrt-2) [Caenorhabditis elegans] 1.0E-151
blast CAE68375 Hypothetical protein CBG14131 [Caenorhabditis briggsae] 1.0E-122
blast CAE63359 Hypothetical protein CBG07767 [Caenorhabditis briggsae] 7.0E-38
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508529.1 1 5-27
F52E4.6 1 5-27
SNAP00000026386 1 5-27
GENEFINDER00000026391 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:188061_S_AT
tccaacagccagctcaagtcgcttacccgggagttgtgaatccagccacaaactacggac
aattttctcaacaagcgtacggagtcgcacaaaatggacaatattctggatatccacaat
atgctcaacagcaacctcagccacaatactaccaagacccatttgccgcaatgcttcaac
aacagcaccaagcattccagcaacaagtttatgctaaccagcagcagcaacaacaacaga
tgcagcagcagcagcagcaacaacaagcacaaccacagcaacagcagcaaccagctcagc
cacagcaacaacttggatttgccccactcccacagttcccacaaccaatgatgttccaag
ctccacaagttgtcgctcagccaggagtagcagcagcagcaggagttccacaaatgccaa
ttggtgctcttccacaaatgccggttcaaatgacatctacacttccaccaatgaccctcc
caaaacttgaggatcttccaaagcttcaaattccaagcgtagaagatgttgagcaggtca
tcccacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCAACAGCCAGCTCAAGTCGCTTA 302 587 779 Antisense
GTCGCTTACCCGGGAGTTGTGAATC 630 453 796 Antisense
AAGACCCATTTGCCGCAATGCTTCA 351 153 932 Antisense
AACAACAGCACCAAGCATTCCAGCA 368 135 956 Antisense
GTTCCAAGCTCCACAAGTTGTCGCT 462 439 1131 Antisense
GTCGCTCAGCCAGGAGTAGCAGCAG 413 473 1150 Antisense
AAATGCCAATTGGTGCTCTTCCACA 481 119 1190 Antisense
CTCTTCCACAAATGCCGGTTCAAAT 645 227 1205 Antisense
TCAAATGACATCTACACTTCCACCA 471 629 1224 Antisense
ACCAATGACCCTCCCAAAACTTGAG 672 83 1245 Antisense
AGATGTTGAGCAGGTCATCCCACCA 691 67 1302 Antisense
Sequence Source Affymetrix Proprietary Database