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[188060_s_at]

Description ZK270.1 /REP_DB=WormBase Gene ID /WP=CE15305 /GEN=ptr-23 /TR=O02246 /GB=CAB05002.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      4grp_highest_8_8 > 04      4grp_high_8_8 > 38      6grp_highest_nonorm > 74      6grp_total > 01      4grp_total > 41      6grp_cgc > 64      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 390
1 2 3 4 range
A 489.6
(-3)
P 		818.9
(3)
P 		811.5
(2.9)
P 		777.1
(2.2)
P 		329
B 481
(-3)
P 		785.8
(3)
P 		762.1
(2.5)
P 		769.5
(2.7)
P 		305
C 530.7
(-3)
P 		871.4
(3)
P 		830
(2.3)
P 		683.7
(-0.3)
P 		341
avr 500.4
(-3) 		825.4
(3) 		801.2
(2.6) 		743.4
(1.5) 		325

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 367
1 2 3 4 5 6 range
A 575.5
(-1.1)
P 		754.3
(2.5)
P 		516.2
(-2.3)
P 		481.2
(-3)
P 		779.5
(3)
P 		562.2
(-1.4)
P 		298
B 645.4
(-0.2)
P 		841.2
(3)
P 		474.5
(-3)
P 		613.2
(-0.7)
P 		756.4
(1.6)
P 		640.2
(-0.3)
P 		367
C 618.8
(-1.7)
P 		826
(3)
P 		574.4
(-2.8)
P 		594.1
(-2.3)
P 		776.8
(1.9)
P 		564.1
(-3)
P 		262
avr 613.2
(-1.1) 		807.2
(3) 		521.7
(-3) 		562.8
(-2.1) 		770.9
(2.2) 		588.8
(-1.6) 		286
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 178.3
(0.9)
P 		177.8
(0.9)
P 		212.1
(3)
P 		113.8
(-3)
P 		98
B 153.4
(-3)
P 		194.1
(3)
P 		176.6
(0.4)
P 		164
(-1.4)
P 		41
C 175.7
(-0.9)
P 		250.5
(1.7)
P 		289.3
(3)
P 		115.3
(-3)
P 		174
avr 169.1
(-0.6) 		207.5
(1.8) 		226
(3) 		131
(-3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 201
1 2 3 4 5 6 range
A 106.1
(-3)
P 		268.3
(3)
P 		112.4
(-2.8)
P 		122
(-2.4)
P 		235.2
(1.8)
P 		136.9
(-1.9)
P 		162
B 224.6
(0.4)
P 		280
(2.1)
P 		115.2
(-3)
P 		162.4
(-1.5)
P 		307.3
(3)
P 		238.7
(0.9)
P 		192
C 229.4
(2)
P 		252
(3)
P 		146.2
(-1.8)
P 		119.5
(-3)
P 		251.4
(3)
P 		188.8
(0.1)
P 		133
avr 186.7
(-0.4) 		266.8
(3) 		124.6
(-3) 		134.6
(-2.6) 		264.6
(2.9) 		188.1
(-0.3) 		142
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188060_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2256
Sequence Type Exemplar sequence
Representative Public ID ZK270.1 NCBI
Target Description ZK270.1 /REP_DB=WormBase Gene ID /WP=CE15305 /GEN=ptr-23 /TR=O02246 /GB=CAB05002.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061202(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061202 NCBI Caenorhabditis elegans PaTched Related family member (ptr-23) (ptr-23) mRNA, complete cds. 11/11 A 
GENEFINDER00000031941 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14919978:14920890:1 11/11 None
ZK270.1 ENSEMBL cdna:known chromosome:CEL140:I:14917358:14921241:1 gene:ZK270.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14917325-14920821(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ptr-23
Ensembl ZK270.1
Entrez Gene 173362 Entrez gene
SwissProt O02246 EMBL-EBI
WormBase CE15305 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8158 hedgehog receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05002 Hypothetical protein ZK270.1 [Caenorhabditis elegans] emb|CAB04167.1| Hypothetical protein ZK270.1 [Caenorhabditis elegans] ref|NP_493603.1| PaTched Related family member (ptr-23) [Caenorhabditis elegans] 0.0
blast CAE72568 Hypothetical protein CBG19753 [Caenorhabditis briggsae] 0.0
blast CAE60539 Hypothetical protein CBG04166 [Caenorhabditis briggsae] 0.0
blast CAB05002 Hypothetical protein ZK270.1 [Caenorhabditis elegans] emb|CAB04167.1| Hypothetical protein ZK270.1 [Caenorhabditis elegans] ref|NP_493603.1| PaTched Related family member (ptr-23) [Caenorhabditis elegans] 1.0E-135
blast CAE72568 Hypothetical protein CBG19753 [Caenorhabditis briggsae] 1.0E-129
blast CAE60539 Hypothetical protein CBG04166 [Caenorhabditis briggsae] 6.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR003392 EMBL-EBI Patched family 1.0E-126
Pfam IPR003392 EMBL-EBI Patched family 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493603.1 10 50-72,315-337,347-369,376-398,466-488,546-568,782-801,806-828,886-908,915-937
ZK270.1 10 50-72,315-337,347-369,376-398,466-488,546-568,782-801,806-828,886-908,915-937
GENEFINDER00000031941 4 37-56,61-83,141-163,170-192
Sequence
Target Sequence 
>C. ELEGANS:188060_S_AT
aaaccatggtgttatgtgtagtactgtgcaatcttcatggtctcgtgttcttacctgcta
tcttgattcttttggattctattcgatgggcttgtaggcctaagggtgctgctgcacaac
gtccaaagcagccaaaaaccaattctcgccagaaacagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACCATGGTGTTATGTGTAGTACT 454 125 2750 Antisense
TATGTGTAGTACTGTGCAATCTTCA 263 655 2762 Antisense
TGTTCTTACCTGCTATCTTGATTCT 153 563 2795 Antisense
GCTATCTTGATTCTTTTGGATTCTA 378 303 2806 Antisense
TTGGATTCTATTCGATGGGCTTGTA 89 705 2821 Antisense
GATGGGCTTGTAGGCCTAAGGGTGC 206 409 2834 Antisense
TGTAGGCCTAAGGGTGCTGCTGCAC 97 557 2842 Antisense
TAAGGGTGCTGCTGCACAACGTCCA 260 637 2850 Antisense
GCACAACGTCCAAAGCAGCCAAAAA 590 317 2863 Antisense
GCAGCCAAAAACCAATTCTCGCCAG 318 313 2877 Antisense
AAACCAATTCTCGCCAGAAACAGAA 378 113 2885 Antisense
Sequence Source Affymetrix Proprietary Database