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[188059_at]

Description ZK270.1 /REP_DB=WormBase Gene ID /WP=CE15305 /GEN=ptr-23 /TR=O02246 /GB=CAB05002.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      4grp_highest_8_8 > 03      4grp_high_8_8 > 47      6grp_highest_nonorm > 76      6grp_total > 0      4grp_total > 41      6grp_total_sub > Hat      6grp_cgc > 64      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 620
1 2 3 4 range
A 819.5
(-3)
P 		1326.7
(3)
P 		1311.3
(2.8)
P 		906.4
(-2)
P 		507
B 742.4
(-3)
P 		1181
(1.4)
P 		1338.7
(3)
P 		1107.2
(0.7)
P 		596
C 718.3
(-3)
P 		1221.6
(3)
P 		1199.9
(2.7)
P 		861.6
(-1.3)
P 		503
avr 760.1
(-3) 		1243.1
(2.5) 		1283.3
(3) 		958.4
(-0.7) 		523

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 522
1 2 3 4 5 6 range
A 828.6
(-2.7)
P 		1289.2
(3)
P 		803.8
(-3)
P 		834.3
(-2.6)
P 		1220.1
(2.1)
P 		1107
(0.7)
P 		485
B 818.4
(-3)
P 		1276.7
(3)
P 		1010.4
(-0.5)
P 		930.7
(-1.5)
P 		1119.7
(0.9)
P 		870.4
(-2.3)
P 		458
C 870.2
(-3)
P 		1326
(3)
P 		926.5
(-2.3)
P 		1100.5
(0)
P 		1261.5
(2.2)
P 		882.3
(-2.8)
P 		456
avr 839.1
(-3) 		1297.3
(3) 		913.6
(-2) 		955.2
(-1.5) 		1200.4
(1.7) 		953.2
(-1.5) 		458
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 286
1 2 3 4 range
A 298.4
(1.7)
P 		288
(1.4)
P 		342.8
(3)
P 		132.7
(-3)
P 		210
B 236.8
(-2.9)
P 		291.7
(1.5)
P 		310.2
(3)
P 		235.9
(-3)
P 		74
C 237.8
(-1)
P 		351.2
(1.5)
P 		418.2
(3)
P 		145.3
(-3)
P 		273
avr 257.7
(-0.2) 		310.3
(1.5) 		357.1
(3) 		171.3
(-3) 		186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 306
1 2 3 4 5 6 range
A 152.7
(-3)
P 		458.5
(3)
P 		175.1
(-2.6)
P 		211.6
(-1.8)
P 		368.2
(1.2)
P 		269.5
(-0.7)
P 		306
B 284.7
(-1.9)
P 		425
(2.1)
P 		245.4
(-3)
P 		246.5
(-3)
P 		454.9
(3)
P 		324.6
(-0.7)
P 		210
C 322.5
(0.2)
P 		404.6
(2.9)
P 		235.8
(-2.5)
P 		221.3
(-3)
P 		408.2
(3)
P 		295.4
(-0.6)
P 		187
avr 253.3
(-2) 		429.4
(3) 		218.8
(-3) 		226.5
(-2.8) 		410.4
(2.5) 		296.5
(-0.8) 		211
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188059_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2256
Sequence Type Exemplar sequence
Representative Public ID ZK270.1 NCBI
Target Description ZK270.1 /REP_DB=WormBase Gene ID /WP=CE15305 /GEN=ptr-23 /TR=O02246 /GB=CAB05002.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061202(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061202 NCBI Caenorhabditis elegans PaTched Related family member (ptr-23) (ptr-23) mRNA, complete cds. 11/11 A 
SNAP00000031934 ENSEMBL cdna:SNAP chromosome:CEL140:I:14919899:14920583:1 11/11 None
GENEFINDER00000031941 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14919978:14920890:1 11/11 None
ZK270.1 ENSEMBL cdna:known chromosome:CEL140:I:14917358:14921241:1 gene:ZK270.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14917325-14920821(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ptr-23
Ensembl ZK270.1
Entrez Gene 173362 Entrez gene
SwissProt O02246 EMBL-EBI
WormBase CE15305 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8158 hedgehog receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05002 Hypothetical protein ZK270.1 [Caenorhabditis elegans] emb|CAB04167.1| Hypothetical protein ZK270.1 [Caenorhabditis elegans] ref|NP_493603.1| PaTched Related family member (ptr-23) [Caenorhabditis elegans] 0.0
blast CAE72568 Hypothetical protein CBG19753 [Caenorhabditis briggsae] 0.0
blast CAE60539 Hypothetical protein CBG04166 [Caenorhabditis briggsae] 0.0
blast CAB05002 Hypothetical protein ZK270.1 [Caenorhabditis elegans] emb|CAB04167.1| Hypothetical protein ZK270.1 [Caenorhabditis elegans] ref|NP_493603.1| PaTched Related family member (ptr-23) [Caenorhabditis elegans] 1.0E-135
blast CAE72568 Hypothetical protein CBG19753 [Caenorhabditis briggsae] 1.0E-129
blast CAB05002 Hypothetical protein ZK270.1 [Caenorhabditis elegans] emb|CAB04167.1| Hypothetical protein ZK270.1 [Caenorhabditis elegans] ref|NP_493603.1| PaTched Related family member (ptr-23) [Caenorhabditis elegans] 1.0E-109
blast CAE72568 Hypothetical protein CBG19753 [Caenorhabditis briggsae] 1.0E-103
Protein Domains
Database ID Description E-Value
Pfam IPR003392 EMBL-EBI Patched family 1.0E-126
Pfam IPR003392 EMBL-EBI Patched family 1.9E-118
Pfam IPR003392 EMBL-EBI Patched family 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493603.1 10 50-72,315-337,347-369,376-398,466-488,546-568,782-801,806-828,886-908,915-937
ZK270.1 10 50-72,315-337,347-369,376-398,466-488,546-568,782-801,806-828,886-908,915-937
SNAP00000031934 3 64-83,88-110,166-188
GENEFINDER00000031941 4 37-56,61-83,141-163,170-192
Sequence
Target Sequence 
>C. ELEGANS:188059_AT
tcgacaatatgcctactgacacgtggcaatcgattctcggaactctcgtttgcatggcaa
tggtgtgctttgttttcctgaacaattggtttactgtagctattgcctcactctccgttt
tgtcaatttgtgctggaattctaggatttttgtcatggtggaaagtggatttagatccaa
tcacaatggctgcaatgattatctccattgggttctctgtcgatattcccgctcacgtat
catatcattactatcaagcttcaatacaagaaggacccatgtctccgccatcatctcgtc
ttgcaaactgtctatcttctgttgcattcccagcattgcaggcagcgttgtccacaattt
tgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGACAATATGCCTACTGACACGTG 106 601 2336 Antisense
ATCGATTCTCGGAACTCTCGTTTGC 126 37 2364 Antisense
GTTTACTGTAGCTATTGCCTCACTC 610 449 2424 Antisense
TCACTCTCCGTTTTGTCAATTTGTG 608 627 2443 Antisense
TTGGGTTCTCTGTCGATATTCCCGC 704 707 2543 Antisense
GATATTCCCGCTCACGTATCATATC 85 427 2557 Antisense
TACAAGAAGGACCCATGTCTCCGCC 473 641 2600 Antisense
ATCATCTCGTCTTGCAAACTGTCTA 680 29 2625 Antisense
AACTGTCTATCTTCTGTTGCATTCC 313 143 2641 Antisense
TGCATTCCCAGCATTGCAGGCAGCG 689 577 2658 Antisense
CAGGCAGCGTTGTCCACAATTTTGT 324 209 2674 Antisense
Sequence Source Affymetrix Proprietary Database