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[188057_at] 7TM chemoreceptor, sra family

Description AH6.7 /REP_DB=WormBase Gene ID /WP=CE01461 /GEN=sra-3 /TR=SW:Q09205 /GB=CAA88086.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 12      6grp_cgc > 65      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 36.8
(-1.6)
A 		6.1
(-3)
A 		5.5
(-3)
A 		135.1
(3)
P 		130
B 34.2
(-1.1)
A 		44.9
(-0.2)
A 		12
(-3)
A 		83.6
(3)
P 		72
C 58.7
(-1.4)
A 		63.8
(-1.1)
A 		30
(-3)
A 		135.4
(3)
P 		105
avr 43.2
(-1.4) 		38.3
(-1.7) 		15.8
(-3) 		118
(3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 5.2
(-3)
A 		49.1
(1.8)
A 		31.1
(-0.2)
A 		25.2
(-0.8)
A 		59.9
(3)
A 		43
(1.1)
M 		55
B 17.7
(-2.8)
A 		38.1
(-0.8)
A 		29.2
(-1.7)
M 		76.9
(3)
A 		65.5
(1.9)
A 		16.1
(-3)
A 		61
C 28.4
(-0.1)
A 		31.7
(0.3)
A 		49.1
(2.8)
A 		8.2
(-3)
A 		18
(-1.6)
A 		50.7
(3)
A 		43
avr 17.1
(-3) 		39.6
(1.4) 		36.5
(0.8) 		36.8
(0.9) 		47.8
(3) 		36.6
(0.8) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 13.4
(0.9)
A 		1.3
(-3)
A 		1.4
(-3)
A 		19.8
(3)
P 		19
B 10.9
(0.2)
A 		11.1
(0.3)
A 		2.8
(-3)
A 		17.8
(3)
P 		15
C 19.4
(1.3)
A 		18.4
(0.9)
A 		10.5
(-3)
A 		22.8
(3)
P 		12
avr 14.6
(0.8) 		10.3
(-0.9) 		4.9
(-3) 		20.1
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 1
(-3)
A 		17.5
(2.8)
A 		6.8
(-1)
A 		6.4
(-1.1)
A 		18.1
(3)
A 		10.5
(0.3)
M 		17
B 6.2
(-2.9)
A 		12.7
(-1)
A 		7.1
(-2.7)
M 		20.4
(1.2)
A 		26.6
(3)
A 		6
(-3)
A 		21
C 10.5
(0.5)
A 		9.7
(0.2)
A 		12.5
(1.2)
A 		1.6
(-3)
A 		5.8
(-1.4)
A 		17
(3)
A 		15
avr 5.9
(-3) 		13.3
(1.1) 		8.8
(-1.4) 		9.5
(-1) 		16.8
(3) 		11.2
(-0.1) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188057_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2842
Sequence Type Exemplar sequence
Representative Public ID AH6.7 NCBI
Target Description AH6.7 /REP_DB=WormBase Gene ID /WP=CE01461 /GEN=sra-3 /TR=SW:Q09205 /GB=CAA88086.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063647(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063647 NCBI Caenorhabditis elegans Serpentine Receptor, class A (alpha) family member (sra-3) (sra-3) mRNA, complete cds. 11/11 None
AH6.7 ENSEMBL cdna:known chromosome:CEL140:II:9539231:9540733:-1 gene:AH6.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033436 2/11 Cross Hyb Matching Probes None
GENEFINDER00000033440 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9539227-9540730(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sra family
Gene Symbol sra-3
Ensembl AH6.7
Entrez Gene 191774 Entrez gene
SwissProt Q09205 EMBL-EBI
WormBase CE01461 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88086 Hypothetical protein AH6.7 [Caenorhabditis elegans] ref|NP_496048.1| Serpentine Receptor, class A (alpha) family member (sra-3) [Caenorhabditis elegans] sp|Q09205|SRA3_CAEEL Serpentine receptor class alpha-3 (Protein sra-3) 1.0E-163
blast 2123261C chemosensory receptor 1.0E-162
blast CAA88079 Hypothetical protein AH6.8 [Caenorhabditis elegans] ref|NP_496049.1| Serpentine Receptor, class A (alpha) family member (sra-4) [Caenorhabditis elegans] sp|Q09206|SRA4_CAEEL Serpentine receptor class alpha-4 (Protein sra-4) 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496048.1 5 20-42,141-163,188-207,237-259,274-296
AH6.7 5 20-42,141-163,188-207,237-259,274-296
Sequence
Target Sequence 
>C. ELEGANS:188057_AT
gcgagcatgtgctactttcataaagaaatacgagaaaaggaaaagcttagcaactggcat
catcacttctattattgtattgctattaagtggaagcactgctcgaataattatttggga
tgatccattgtctgaatatcaacttgcatgtacttcatggccaagtaaaagccgcgacag
atccactatgttcttcagtatttgcacttttatttccttgttcaatttggtcatttctct
tctgattcgaagacataatgaaaaactagaatattcaaccccattcgtcgtaggtccaag
atttcggaaacgagaagtaattgactcaactagtacaatctgctttttgacgtttttcca
attcatctttatgtttatctattcattcggtgtgttcctccttggaactatcagggaaat
tattggctatgagcagtattatttctgggtcgtttgggtttatacaatcccattcattgc
tgcatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGAGCATGTGCTACTTTCATAAAG 272 289 387 Antisense
AGCAACTGGCATCATCACTTCTATT 172 77 435 Antisense
TAAAAGCCGCGACAGATCCACTATG 481 639 552 Antisense
GATCCACTATGTTCTTCAGTATTTG 529 415 566 Antisense
ATTTGCACTTTTATTTCCTTGTTCA 579 17 586 Antisense
TTTGGTCATTTCTCTTCTGATTCGA 414 665 612 Antisense
ATATTCAACCCCATTCGTCGTAGGT 261 1 657 Antisense
GTACAATCTGCTTTTTGACGTTTTT 53 459 719 Antisense
GACGTTTTTCCAATTCATCTTTATG 675 377 735 Antisense
ATCTATTCATTCGGTGTGTTCCTCC 608 31 763 Antisense
TACAATCCCATTCATTGCTGCATCC 142 643 849 Antisense
Sequence Source Affymetrix Proprietary Database