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[188056_at]

Description W09H1.4_rc /REP_DB=WormBase Gene ID /WP=CE16574 /TR=O45902 /GB=CAB04957.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_total > 03      4grp_total > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 7.8
(3)
A 		3.7
(-3)
A 		5.1
(-1)
A 		5.9
(0.2)
A 		4
B 4.3
(1.3)
A 		1.6
(-3)
A 		5.4
(3)
A 		4.3
(1.3)
A 		4
C 2.9
(-2.7)
A 		5.4
(-2.2)
A 		1.4
(-3)
A 		33.3
(3)
A 		32
avr 5
(-2.2) 		3.6
(-3) 		4
(-2.8) 		14.5
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 4.9
(3)
A 		2.1
(-2.1)
A 		1.9
(-2.5)
A 		2.4
(-1.5)
A 		1.6
(-3)
A 		4.7
(2.6)
A 		3
B 3.8
(-2.1)
A 		18
(3)
A 		1.2
(-3)
A 		1.6
(-2.9)
A 		12.9
(1.2)
A 		3.1
(-2.3)
A 		17
C 17.1
(2.5)
A 		3.6
(-2.3)
A 		6
(-1.4)
A 		18.4
(3)
A 		8.8
(-0.4)
A 		1.6
(-3)
A 		17
avr 8.6
(3) 		7.9
(2.3) 		3
(-3) 		7.5
(1.8) 		7.8
(2.1) 		3.1
(-2.9) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 2.8
(3)
A 		0.8
(-3)
A 		1.3
(-1.5)
A 		0.9
(-2.7)
A 		2
B 1.4
(3)
A 		0.4
(-3)
A 		1.3
(2.4)
A 		0.9
(0)
A 		1
C 1
(-2.4)
A 		1.5
(-1.8)
A 		0.5
(-3)
A 		5.6
(3)
A 		5
avr 1.7
(-0) 		0.9
(-3) 		1
(-2.6) 		2.5
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.9
(1.3)
A 		0.7
(-0.4)
A 		0.4
(-3)
A 		0.6
(-1.3)
A 		0.5
(-2.1)
A 		1.1
(3)
A 		1
B 1.3
(-1.9)
A 		6
(3)
A 		0.3
(-3)
A 		0.4
(-2.9)
A 		5.2
(2.2)
A 		1.2
(-2.1)
A 		6
C 6.3
(3)
A 		1.1
(-2.4)
A 		1.5
(-2)
A 		3.7
(0.3)
A 		2.8
(-0.6)
A 		0.5
(-3)
A 		6
avr 2.8
(3) 		2.6
(2.4) 		0.7
(-3) 		1.6
(-0.4) 		2.8
(3) 		0.9
(-2.4) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188056_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28110
Sequence Type Exemplar sequence
Representative Public ID W09H1.4 NCBI
Target Description W09H1.4_rc /REP_DB=WormBase Gene ID /WP=CE16574 /TR=O45902 /GB=CAB04957.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) W09H1.4
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
W09H1.4 W09H1.4_rc /REP_DB=WormBase Gene ID /WP=CE16574 /TR=O45902 /GB=CAB04957.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /REVCOMP A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064398 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13184988-13185490(-) 100.0 100.0
Public Domain and Genome References
Ensembl W09H1.4
Sequence
Target Sequence 
>C. ELEGANS:188056_AT
caattttgagagctttttccgccgtcccttttgtagtaaactggagccccaacatgaaat
tggattaatctgatgaatgttgcttcgatttgatagtggtgcttcagctttctacaaaag
ggacgccggaaaaagctcaaaaatcgagggggacgtcccccttcgtcccccatgacagcc
ctaagcttcactctatttttctgagctctgatagagtcgatgatgcgatccttgatcttt
ttctcgtcctcgataagatctgttgtcatcgagaaggtatcgaggaagactccgtgatta
tcgtagtgagcagtatacgatttgacttttgccagttccatcgcacgtggcatgatctca
tccttgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATTTTGAGAGCTTTTTCCGCCGT 690 179 14 Antisense
GTAGTAAACTGGAGCCCCAACATGA 663 453 46 Antisense
GTTGCTTCGATTTGATAGTGGTGCT 329 439 92 Antisense
TAGTGGTGCTTCAGCTTTCTACAAA 361 653 107 Antisense
GCTTCACTCTATTTTTCTGAGCTCT 596 305 198 Antisense
GAGTCGATGATGCGATCCTTGATCT 245 401 227 Antisense
TGCGATCCTTGATCTTTTTCTCGTC 572 583 237 Antisense
CTCGTCCTCGATAAGATCTGTTGTC 332 233 256 Antisense
GGAAGACTCCGTGATTATCGTAGTG 1 531 297 Antisense
GATTTGACTTTTGCCAGTTCCATCG 15 429 332 Antisense
CACGTGGCATGATCTCATCCTTGAA 71 199 357 Antisense
Sequence Source Affymetrix Proprietary Database