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[188055_at] Globin

Description C26C6.7 /REP_DB=WormBase Gene ID /WP=CE05316 /TR=Q18209 /GB=CAA96599.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Globin
Cluster 6grp_high1_10_10 > 27      6grp_total > 17      4grp_total > 21      6grp_high1_sub > Cu      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 42.9
(-0)
P 		51.3
(0.6)
A 		3.9
(-3)
A 		82.8
(3)
A 		79
B 51.1
(1.1)
P 		36.5
(-0.4)
A 		11
(-3)
A 		70.1
(3)
A 		59
C 84.1
(0.7)
P 		47.5
(-2.6)
A 		43.5
(-3)
P 		110.1
(3)
P 		67
avr 59.4
(0.5) 		45.1
(-0.7) 		19.5
(-3) 		87.7
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 151.3
(3)
P 		62.4
(-1.2)
P 		79.9
(-0.4)
P 		25.7
(-3)
M 		39.9
(-2.3)
A 		42.1
(-2.2)
M 		126
B 106.2
(3)
P 		67
(-0.4)
P 		55.4
(-1.4)
P 		58.3
(-1.1)
P 		36.6
(-3)
P 		67.6
(-0.3)
P 		70
C 90.6
(3)
P 		72.4
(1.2)
P 		47.6
(-1.3)
P 		29.9
(-3)
A 		34.8
(-2.5)
P 		42.7
(-1.7)
P 		61
avr 116
(3) 		67.3
(-0.7) 		61
(-1.2) 		38
(-2.9) 		37.1
(-3) 		50.8
(-2) 		79
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 15.6
(3)
P 		11.1
(1.2)
A 		1
(-3)
A 		12.1
(1.6)
A 		15
B 16.3
(3)
P 		9
(-0.2)
A 		2.5
(-3)
A 		14.9
(2.4)
A 		14
C 27.8
(3)
P 		13.7
(-3)
A 		15.2
(-2.4)
P 		18.6
(-0.9)
P 		14
avr 19.9
(3) 		11.3
(-0.8) 		6.2
(-3) 		15.2
(0.9) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 27.9
(3)
P 		22.2
(1.4)
P 		17.4
(0.1)
P 		6.5
(-3)
M 		12
(-1.5)
A 		10.2
(-2)
M 		21
B 37
(3)
P 		22.3
(-0.7)
P 		13.4
(-3)
P 		15.4
(-2.5)
P 		14.9
(-2.6)
P 		25.2
(-0)
P 		24
C 33.6
(3)
P 		22.1
(0.5)
P 		12.1
(-1.7)
P 		6
(-3)
A 		11.3
(-1.8)
P 		14.3
(-1.2)
P 		28
avr 32.8
(3) 		22.2
(0.3) 		14.3
(-1.7) 		9.3
(-3) 		12.7
(-2.1) 		16.6
(-1.1) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188055_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1142
Sequence Type Exemplar sequence
Representative Public ID C26C6.7 NCBI
Target Description C26C6.7 /REP_DB=WormBase Gene ID /WP=CE05316 /TR=Q18209 /GB=CAA96599.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Globin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059706(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059706 NCBI Caenorhabditis elegans C26C6.7 (Globin) mRNA, complete cds. 11/11 None
GENEFINDER00000003876 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7514100:7520620:1 11/11 None
SNAP00000003868 ENSEMBL cdna:SNAP chromosome:CEL140:I:7517711:7520620:1 11/11 None
C26C6.7 ENSEMBL cdna:known chromosome:CEL140:I:7516771:7520620:1 gene:C26C6.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7516701-7520551(+) 100.0 100.0
Public Domain and Genome References
Gene Title Globin
Ensembl C26C6.7
Entrez Gene 182935 Entrez gene
SwissProt Q18209 EMBL-EBI
WormBase CE05316 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15671 oxygen transport inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA96599 Hypothetical protein C26C6.7 [Caenorhabditis elegans] ref|NP_492107.1| C26C6.7 [Caenorhabditis elegans] 0.0
blast CAE66566 Hypothetical protein CBG11881 [Caenorhabditis briggsae] 1.0E-178
blast CAE66566 Hypothetical protein CBG11881 [Caenorhabditis briggsae] 1.0E-176
blast CAA96598 Hypothetical protein C26C6.6 [Caenorhabditis elegans] ref|NP_492106.1| C26C6.6 [Caenorhabditis elegans] 6.0E-67
blast CAD31696 Hypothetical protein R90.5 [Caenorhabditis elegans] ref|NP_741635.1| R90.5 [Caenorhabditis elegans] 4.0E-12
Protein Domains
Database ID Description E-Value
scop a.1.1.Globins All alpha proteins; Globin-like; Globin-like; Globins 8.5
Pfam IPR000971 EMBL-EBI Globin 5.1E-21
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.3E-5
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 3.1E-12
Pfam IPR000971 EMBL-EBI Globin 5.1E-21
Pfam IPR000971 EMBL-EBI Globin 5.1E-21
Sequence
Target Sequence 
>C. ELEGANS:188055_AT
caacaacaacgactttaattccattaacatgtgctcaaattcatttggttagagcattat
ggagacaagtttatacaacaaaaggaccaacagtgattggagcaagtatatatcatcgat
tatgttttaagaatgtgatggtaaaagaacaaatgaaacaagtcgagctgccgccgaaat
tccaaaatcgtgacaattttatcaaagctcattgcaaagcagtagctgaattaatagatc
aagttgttgagaatctggatcatttggataatgttacgggtgaattgatgagaattggaa
gggtacatgcaaaagtgctacgtggagaattaactgggaaattatggaatacggtagctg
aaactatcattgattgtacactggaatggggtgacaggaggtgtcgaagtgaaacagtac
ggaaggcttgggcactgattgttgcatttgttatcgaaaaaatcaaggcaggacatcatg
agcagaggaaactaatgctaggaacacgtcaatcgcttccatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACAACAACGACTTTAATTCCATT 545 189 674 Antisense
ATTCCATTAACATGTGCTCAAATTC 685 7 691 Antisense
AAATGAAACAAGTCGAGCTGCCGCC 409 119 824 Antisense
GCTGCCGCCGAAATTCCAAAATCGT 692 295 840 Antisense
GTGCTACGTGGAGAATTAACTGGGA 709 467 988 Antisense
GAATACGGTAGCTGAAACTATCATT 579 321 1020 Antisense
ACTATCATTGATTGTACACTGGAAT 521 101 1036 Antisense
AGTACGGAAGGCTTGGGCACTGATT 519 61 1089 Antisense
GGCACTGATTGTTGCATTTGTTATC 633 535 1104 Antisense
ATCAAGGCAGGACATCATGAGCAGA 36 27 1135 Antisense
TAGGAACACGTCAATCGCTTCCATC 503 653 1172 Antisense
Sequence Source Affymetrix Proprietary Database