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[188054_at] zw4

Description B0464.4 /REP_DB=WormBase Gene ID /WP=CE00018 /TR=SW:Q03562 /GB=CAA79538.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=zw4
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      4grp_highest_8_8 > 47      4grp_high_8_8 > 03      6grp_highest_nonorm > 85      6grp_total > 49      4grp_total > 13      6grp_highest_sub > Cu      6grp_cgc > 09      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 567
1 2 3 4 range
A 947.5
(0.9)
P 		814.8
(-1.3)
P 		709.7
(-3)
P 		1075.8
(3)
P 		366
B 973.8
(-1.1)
P 		881.3
(-2.4)
P 		835
(-3)
P 		1276.6
(3)
P 		442
C 925.4
(0.5)
P 		773.5
(-3)
P 		809.5
(-2.2)
P 		1034.3
(3)
P 		261
avr 948.9
(-0.1) 		823.2
(-2.3) 		784.7
(-3) 		1128.9
(3) 		344

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 478
1 2 3 4 5 6 range
A 799.4
(1)
P 		867.7
(2.1)
P 		537.3
(-3)
P 		626
(-1.6)
P 		916
(2.8)
P 		926.7
(3)
P 		389
B 818.4
(1.3)
P 		748.6
(0.4)
P 		476.3
(-3)
P 		734.8
(0.2)
P 		761.3
(0.6)
P 		954
(3)
P 		478
C 855.2
(1.9)
P 		726.8
(-1)
P 		637.2
(-3)
P 		790.4
(0.5)
P 		772.6
(0.1)
P 		903
(3)
P 		266
avr 824.3
(1.4) 		781
(0.7) 		550.3
(-3) 		717.1
(-0.3) 		816.6
(1.2) 		927.9
(3) 		378
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 188
1 2 3 4 range
A 345
(3)
P 		176.9
(-2.4)
P 		185.5
(-2.1)
P 		157.5
(-3)
P 		188
B 310.5
(3)
P 		217.6
(-1.8)
P 		193.5
(-3)
P 		272
(1)
P 		117
C 306.3
(3)
P 		222.4
(-0.8)
P 		282.1
(1.9)
P 		174.4
(-3)
P 		132
avr 320.6
(3) 		205.6
(-2.8) 		220.4
(-2) 		201.3
(-3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 240
1 2 3 4 5 6 range
A 147.4
(-2)
P 		308.6
(3)
P 		117
(-3)
P 		158.8
(-1.7)
P 		276.4
(2)
P 		225.6
(0.4)
P 		192
B 284.8
(1.2)
P 		249.2
(0.3)
P 		115.7
(-3)
P 		194.6
(-1)
P 		309.3
(1.8)
P 		355.7
(3)
P 		240
C 317
(3)
P 		221.8
(-0.6)
P 		162.2
(-2.9)
P 		159
(-3)
P 		250
(0.5)
P 		302.3
(2.4)
P 		158
avr 249.7
(1.3) 		259.9
(1.7) 		131.6
(-3) 		170.8
(-1.6) 		278.6
(2.4) 		294.5
(3) 		163
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188054_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6884
Sequence Type Exemplar sequence
Representative Public ID B0464.4 NCBI
Target Description B0464.4 /REP_DB=WormBase Gene ID /WP=CE00018 /TR=SW:Q03562 /GB=CAA79538.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=zw4
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066686(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066686 NCBI Caenorhabditis elegans B0464.4 (zw4) mRNA, complete cds. 11/11 None
SNAP00000014948 ENSEMBL cdna:SNAP chromosome:CEL140:III:9470521:9473161:-1 11/11 None
GENEFINDER00000014954 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9470521:9474427:-1 11/11 None
B0464.4.1 ENSEMBL cdna:known chromosome:CEL140:III:9469822:9473172:-1 gene:B0464.4 11/11 None
B0464.4.2 ENSEMBL cdna:known chromosome:CEL140:III:9469823:9485347:-1 gene:B0464.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9470444-9473157(-) 100.0 100.0
Public Domain and Genome References
Gene Title zw4
Gene Symbol bre-3
Ensembl B0464.4
Entrez Gene 176332 Entrez gene
SwissProt Q03562 EMBL-EBI
WormBase CE33592 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1634558_S_AT egghead dm
DROSOPHILA_2:1631621_S_AT egghead dm
DROSGENOME1:151468_S_AT egghead dm
DROSGENOME1:142125_AT egghead dm
Protein Similarities
Method ID Description E-Value
blast CAA79538 Hypothetical protein B0464.4 [Caenorhabditis elegans] ref|NP_499087.2| B0464.4 [Caenorhabditis elegans] gb|AAS21307.1| BRE-3 [Caenorhabditis elegans] sp|Q03562|BRE3_CAEEL Beta 1,4-mannosyltransferase bre-3 (Bt toxin resistant-3 protein) 0.0
blast CAE65207 Hypothetical protein CBG10082 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499087.2 5 7-29,44-66,346-365,380-402,415-437
B0464.4.1 5 7-29,44-66,346-365,380-402,415-437
B0464.4.2 5 7-29,44-66,346-365,380-402,415-437
SNAP00000014948 5 7-29,44-66,346-365,380-402,415-437
GENEFINDER00000014954 6 13-30,51-73,88-110,389-408,423-445,458-480
Sequence
Target Sequence 
>C. ELEGANS:188054_AT
ggattgtttcttttcgatggttgcaatgaaacacggctactcgtttgattttattgaagg
agaaatgcacgagaagagcccattcactatgtgggactttttgcaacaaagaaaacgctg
gctccaaggaattttactcactgttcactcgtcgaaaattgctgttgttcataaagcact
tcttgctctgtcattgtatgcctgggccacaatgccattaacttcacttcaagtattcct
ctgtccactatttccacttccaaggtgtcttccattcgatttcctgctctcgtttgtcgg
tgctctcaatctctacatgtacattttcggagttgtcaaatcgttttctcacaaatatcg
taatagtttgctccgtcttgcgatgtatctcgctggagcactgatgact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTGTTTCTTTTCGATGGTTGCA 126 509 870 Antisense
GCACGAGAAGAGCCCATTCACTATG 552 313 936 Antisense
TTTACTCACTGTTCACTCGTCGAAA 707 671 1002 Antisense
CACTTCTTGCTCTGTCATTGTATGC 163 197 1046 Antisense
GTATGCCTGGGCCACAATGCCATTA 652 453 1065 Antisense
CCACTATTTCCACTTCCAAGGTGTC 73 275 1114 Antisense
CAAGGTGTCTTCCATTCGATTTCCT 33 185 1130 Antisense
GTGCTCTCAATCTCTACATGTACAT 691 479 1169 Antisense
GGAGTTGTCAAATCGTTTTCTCACA 38 519 1198 Antisense
CGTAATAGTTTGCTCCGTCTTGCGA 306 247 1228 Antisense
GTATCTCGCTGGAGCACTGATGACT 228 455 1254 Antisense
Sequence Source Affymetrix Proprietary Database