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[188053_at] 7TM chemoreceptor, sra family

Description AH6.4 /REP_DB=WormBase Gene ID /WP=CE01458 /GEN=sra-1 /TR=SW:Q09203 /GB=CAA88078.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 15      6grp_cgc > 53      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 43
(3)
A 		2.7
(-3)
A 		2.8
(-3)
A 		6.8
(-2.4)
A 		40
B 19.3
(0.4)
A 		5.8
(-3)
A 		29.9
(3)
A 		6
(-3)
A 		24
C 4.7
(-2.6)
A 		5.9
(-2.5)
A 		1.8
(-3)
A 		49.3
(3)
A 		48
avr 22.3
(3) 		4.8
(-3) 		11.5
(-0.7) 		20.7
(2.5) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 3.8
(-2.7)
A 		35.5
(3)
A 		16.8
(-0.4)
A 		3.9
(-2.7)
A 		5.4
(-2.5)
A 		2.4
(-3)
A 		33
B 5.5
(3)
A 		2.8
(-1)
A 		2.2
(-1.8)
A 		3.7
(0.4)
A 		1.4
(-3)
A 		1.6
(-2.7)
A 		4
C 3.2
(-2.3)
A 		1.6
(-3)
A 		1.6
(-3)
A 		7.3
(-0.6)
A 		15.9
(3)
A 		5.8
(-1.2)
A 		14
avr 4.2
(-2.5) 		13.3
(3) 		6.9
(-0.8) 		5
(-2) 		7.6
(-0.4) 		3.3
(-3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 15.7
(3)
A 		0.6
(-3)
A 		0.7
(-3)
A 		1
(-2.8)
A 		15
B 6.1
(2.1)
A 		1.4
(-2.9)
A 		6.9
(3)
A 		1.3
(-3)
A 		6
C 1.6
(-2.2)
A 		1.7
(-2.1)
A 		0.6
(-3)
A 		8.3
(3)
A 		8
avr 7.8
(3) 		1.2
(-3) 		2.7
(-1.6) 		3.5
(-0.9) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.7
(-3)
A 		12.6
(3)
A 		3.7
(-1.5)
A 		1
(-2.8)
A 		1.6
(-2.5)
A 		0.6
(-3)
A 		12
B 1.9
(3)
A 		0.9
(-1.3)
A 		0.5
(-3)
A 		1
(-0.9)
A 		0.6
(-2.6)
A 		0.6
(-2.6)
A 		1
C 1.2
(-2)
A 		0.5
(-2.9)
A 		0.4
(-3)
A 		1.5
(-1.6)
A 		5.1
(3)
A 		2
(-1)
A 		5
avr 1.3
(-2.7) 		4.7
(3) 		1.5
(-2.3) 		1.2
(-2.8) 		2.4
(-0.8) 		1.1
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188053_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3169
Sequence Type Exemplar sequence
Representative Public ID AH6.4 NCBI
Target Description AH6.4 /REP_DB=WormBase Gene ID /WP=CE01458 /GEN=sra-1 /TR=SW:Q09203 /GB=CAA88078.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063641(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063641 NCBI Caenorhabditis elegans Serpentine Receptor, class A (alpha) family member (sra-1) (sra-1) mRNA, complete cds. 11/11 None
SNAP00000033432 ENSEMBL cdna:SNAP chromosome:CEL140:II:9520206:9521117:-1 11/11 None
GENEFINDER00000033443 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9520206:9521581:-1 11/11 None
AH6.4 ENSEMBL cdna:known chromosome:CEL140:II:9520206:9521581:-1 gene:AH6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9520202-9521578(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sra family
Gene Symbol sra-1
Ensembl AH6.4
Entrez Gene 191772 Entrez gene
SwissProt Q09203 EMBL-EBI
WormBase CE01458 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88078 Hypothetical protein AH6.4 [Caenorhabditis elegans] ref|NP_496042.1| Serpentine Receptor, class A (alpha) family member (sra-1) [Caenorhabditis elegans] sp|Q09203|SRA1_CAEEL Serpentine receptor class alpha-1 (Protein sra-1) prf||2123261A chemosensory receptor 1.0E-176
blast CAA88078 Hypothetical protein AH6.4 [Caenorhabditis elegans] ref|NP_496042.1| Serpentine Receptor, class A (alpha) family member (sra-1) [Caenorhabditis elegans] sp|Q09203|SRA1_CAEEL Serpentine receptor class alpha-1 (Protein sra-1) prf||2123261A chemosensory receptor 1.0E-130
blast CAE71737 Hypothetical protein CBG18721 [Caenorhabditis briggsae] 1.0E-94
blast CAE71737 Hypothetical protein CBG18721 [Caenorhabditis briggsae] 3.0E-70
blast CAA88083 Hypothetical protein AH6.10 [Caenorhabditis elegans] ref|NP_496052.1| Serpentine Receptor, class A (alpha) family member (sra-6) [Caenorhabditis elegans] sp|Q09208|SRA6_CAEEL Serpentine receptor class alpha-6 (Protein sra-6) prf||2123261F chemosensory receptor 6.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 1.0E-126
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496042.1 7 24-46,59-81,107-129,142-164,189-211,232-254,274-296
AH6.4 7 24-46,59-81,107-129,142-164,189-211,232-254,274-296
SNAP00000033432 5 28-50,63-85,110-132,153-175,195-217
GENEFINDER00000033443 7 24-46,59-81,107-129,142-164,189-211,232-254,274-296
Sequence
Target Sequence 
>C. ELEGANS:188053_AT
agagcatttgctaccttatacaggaactacacagcaaaaataagtcgattagttggtata
atcatctcaacttttgtgctcataatgagtattgccacgtatcaaattataatcagtgac
gatcctcttgaaggagtagtactttcatgttttgtcccggctcaacatagtgctcaacga
gccaacacatttctatttattgcattgattttgacctttgtaaatttaatttcgtcagca
gccgtgatgttttataacaaaagattggagtatagcattcggtataaggtccgcgaaaga
ttcaagaagcgtgaagcaatttattcaactcacactatttgcgtagtatgcatggctcaa
tttgtaacaatgctcgtgtactcatcaggagttcttatacttcgatgcaacatgagcaat
atattgcttactacattttataaattaattacttgggtttatacagttcaatataacgct
cttctatttcctcttattctgattttccggattcgtgcgacaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGCATTTGCTACCTTATACAGGA 371 69 388 Antisense
AATCATCTCAACTTTTGTGCTCATA 148 171 447 Antisense
TAATCAGTGACGATCCTCTTGAAGG 18 631 497 Antisense
AGTAGTACTTTCATGTTTTGTCCCG 169 61 522 Antisense
TGCTCAACGAGCCAACACATTTCTA 54 581 558 Antisense
AATTTCGTCAGCAGCCGTGATGTTT 323 175 615 Antisense
AAGCAATTTATTCAACTCACACTAT 487 151 701 Antisense
AACAATGCTCGTGTACTCATCAGGA 329 135 753 Antisense
TCAATATAACGCTCTTCTATTTCCT 673 633 855 Antisense
ATTTCCTCTTATTCTGATTTTCCGG 414 17 873 Antisense
TGATTTTCCGGATTCGTGCGACAAA 256 563 887 Antisense
Sequence Source Affymetrix Proprietary Database