[Home] | [Total List]

[188052_s_at]

Description F56D2.7 /REP_DB=WormBase Gene ID /WP=CE11234 /GEN=ced-6 /TR=O01421 /GB=AAB52680.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 37      4grp_highest_8_8 > 60      4grp_high_8_8 > 25      6grp_highest_nonorm > 72      6grp_total > 17      4grp_total > 38      6grp_highest_sub > Cu      6grp_cgc > 06      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 417.4
(3)
P 		336.5
(-1.8)
P 		316.4
(-3)
P 		343.3
(-1.4)
P 		101
B 408.9
(3)
P 		339.8
(-1)
P 		304.4
(-3)
P 		335.9
(-1.2)
P 		105
C 413.6
(3)
P 		308.9
(-1.4)
P 		271.6
(-3)
P 		358.2
(0.7)
P 		142
avr 413.3
(3) 		328.4
(-1.4) 		297.5
(-3) 		345.8
(-0.5) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 295
1 2 3 4 5 6 range
A 605.8
(3)
P 		362.1
(-1.9)
P 		481.8
(0.5)
P 		310.4
(-3)
P 		430.4
(-0.6)
P 		459.3
(0)
P 		295
B 449.6
(0.1)
P 		482.9
(2.3)
P 		473.5
(1.7)
P 		403.9
(-3)
P 		440.5
(-0.5)
P 		492.6
(3)
P 		89
C 545
(3)
P 		475.3
(0.4)
P 		441.8
(-0.9)
P 		430.3
(-1.3)
P 		384.5
(-3)
P 		408.1
(-2.1)
P 		161
avr 533.5
(3) 		440.1
(-0.7) 		465.7
(0.3) 		381.5
(-3) 		418.5
(-1.5) 		453.3
(-0.2) 		152
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 152
(3)
P 		73.1
(-1.7)
P 		82.7
(-1.1)
P 		50.3
(-3)
P 		102
B 130.4
(3)
P 		83.9
(-1.7)
P 		70.5
(-3)
P 		71.6
(-2.9)
P 		60
C 136.9
(3)
P 		88.8
(-0.8)
P 		94.7
(-0.3)
P 		60.4
(-3)
P 		77
avr 139.8
(3) 		81.9
(-1.4) 		82.6
(-1.3) 		60.8
(-3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 111.7
(0.9)
P 		128.8
(2.9)
P 		104.9
(0.1)
P 		78.7
(-3)
P 		129.9
(3)
P 		111.8
(0.9)
P 		51
B 156.4
(0.9)
P 		160.8
(1.2)
P 		115
(-2.4)
P 		107
(-3)
P 		179
(2.6)
P 		183.7
(3)
P 		77
C 202
(3)
P 		145
(0)
P 		112.4
(-1.7)
P 		86.5
(-3)
P 		124.4
(-1)
P 		136.6
(-0.4)
P 		116
avr 156.7
(3) 		144.9
(1.9) 		110.8
(-1.2) 		90.7
(-3) 		144.4
(1.9) 		144
(1.8) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188052_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7910
Sequence Type Exemplar sequence
Representative Public ID F56D2.7 NCBI
Target Description F56D2.7 /REP_DB=WormBase Gene ID /WP=CE11234 /GEN=ced-6 /TR=O01421 /GB=AAB52680.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065802(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065802 NCBI Caenorhabditis elegans CEll Death abnormality family member (ced-6) (ced-6) mRNA, complete cds. 11/11 A 
F56D2.7.1 ENSEMBL cdna:known chromosome:CEL140:III:5595722:5598025:1 gene:F56D2.7 11/11 A 
F56D2.7.2 ENSEMBL cdna:known chromosome:CEL140:III:5595724:5598004:1 gene:F56D2.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007732 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5595722-5597802(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ced-6
Ensembl F56D2.7
Entrez Gene 175773 Entrez gene
SwissProt O76337 EMBL-EBI
WormBase CE33657 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1601965_AT similar to GULP, engulfment adaptor PTB domain containing 1 cfa
CANINE_2:CFA.5913.1.A1_AT similar to GULP, engulfment adaptor PTB domain containing 1 cfa
CANINE_2:CFA.5913.1.A1_S_AT similar to GULP, engulfment adaptor PTB domain containing 1 cfa
CANINE_2:CFAAFFX.22795.1.S1_AT similar to GULP, engulfment adaptor PTB domain containing 1 cfa
DROSOPHILA_2:1638738_S_AT dm
DROSGENOME1:146882_AT dm
CHICKEN:GGAAFFX.25542.1.S1_AT similar to GULP, engulfment adaptor PTB domain containing 1; PTB domain adaptor protein CED-6; engulfment adapter protein gga
HG-U95AV2:41419_AT GULP, engulfment adaptor PTB domain containing 1 hs
HG-U133_PLUS_2:215913_S_AT GULP, engulfment adaptor PTB domain containing 1 hs
HG-U133A_2:215913_S_AT GULP, engulfment adaptor PTB domain containing 1 hs
HG-U133A:215913_S_AT GULP, engulfment adaptor PTB domain containing 1 hs
HG-U133A:204237_AT GULP, engulfment adaptor PTB domain containing 1 hs
HG-U133_PLUS_2:204237_AT GULP, engulfment adaptor PTB domain containing 1 hs
HG-U133A_2:204237_AT GULP, engulfment adaptor PTB domain containing 1 hs
HG-U133_PLUS_2:223837_AT GULP, engulfment adaptor PTB domain containing 1 hs
HG-U133B:223837_AT GULP, engulfment adaptor PTB domain containing 1 hs
HG-U133_PLUS_2:204235_S_AT GULP, engulfment adaptor PTB domain containing 1 hs
HG-U133A_2:204235_S_AT GULP, engulfment adaptor PTB domain containing 1 hs
HG-U133A:204235_S_AT GULP, engulfment adaptor PTB domain containing 1 hs
HU35KSUBA:RC_AA446944_AT GULP, engulfment adaptor PTB domain containing 1 hs
HU35KSUBD:RC_AA431753_AT GULP, engulfment adaptor PTB domain containing 1 hs
U133_X3P:G7705317_3P_AT GULP, engulfment adaptor PTB domain containing 1 hs
U133_X3P:G6409467_3P_A_AT GULP, engulfment adaptor PTB domain containing 1 hs
U133_X3P:G12654538_3P_X_AT GULP, engulfment adaptor PTB domain containing 1 hs
U133_X3P:HS.107056.2.S1_3P_A_AT GULP, engulfment adaptor PTB domain containing 1 hs
U133_X3P:223837_3P_AT GULP, engulfment adaptor PTB domain containing 1 hs
HG-U133A_2:215915_AT GULP, engulfment adaptor PTB domain containing 1 hs
HG-U133_PLUS_2:215915_AT GULP, engulfment adaptor PTB domain containing 1 hs
HG-U133A:215915_AT GULP, engulfment adaptor PTB domain containing 1 hs
HG-U95C:51275_F_AT GULP, engulfment adaptor PTB domain containing 1 hs
HG-U95E:80196_AT GULP, engulfment adaptor PTB domain containing 1 hs
MOUSE430_2:1453771_AT GULP, engulfment adaptor PTB domain containing 1 mm
MOE430B:1453771_AT GULP, engulfment adaptor PTB domain containing 1 mm
MOE430B:1432092_A_AT GULP, engulfment adaptor PTB domain containing 1 mm
MOUSE430_2:1432092_A_AT GULP, engulfment adaptor PTB domain containing 1 mm
MU19KSUBC:TC38731_AT GULP, engulfment adaptor PTB domain containing 1, mRNA (cDNA clone MGC:29398 IMAGE:5068339) mm
RG-U34A:RC_AI639037_AT GULP, engulfment adaptor PTB domain containing 1 (predicted) rn
RAE230A:1376285_AT GULP, engulfment adaptor PTB domain containing 1 (predicted) rn
RAT230_2:1376285_AT GULP, engulfment adaptor PTB domain containing 1 (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
45309 protein phosphorylated amino acid binding inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52680 Cell death abnormality protein 6 [Caenorhabditis elegans] ref|NP_498203.2| CEll Death abnormality family member (ced-6) [Caenorhabditis elegans] gb|AAC24362.1| candidate adaptor protein CED-6 [Caenorhabditis elegans] 0.0
blast CAE64299 Hypothetical protein CBG08974 [Caenorhabditis briggsae] 1.0E-130
blast XP_392026 PREDICTED: similar to ENSANGP00000021640 [Apis mellifera] 4.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR006020 EMBL-EBI Phosphotyrosine interaction domain 1.1E-55
Sequence
Target Sequence 
>C. ELEGANS:188052_S_AT
tctccctcagatttctacatcatcaaatggagcatcaccatccgtgagcccggcatccac
atcaccatctggaccagctccatcaattcctccaccgagacctcctgcactggctcctcc
gccaccagttgctccacgcagaaaccccgttgtttcaccgaaaaactccacggcgggatt
gttggatggattggagttggggtcagctgagccggcaaaaaaagctcctagtaatatttt
cgatgattcgtttgatcccagagctggagaaaaaaagagcactgcagctgagtataatcc
attcggtgcggacttcctcagtggcattcaaaatggtaaagaagcaccaccatcagcctc
cgctgaacttctcgcttctgaagcaatcgctcgtcttccaaagccagaatcctcatctgt
accacccaaaaagaccgctgcagagtatgatgcaatgatcaatgaagtggagaagaagct
tgccgcgatgagtagtggatcatttgagttcgggcagcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCCCTCAGATTTCTACATCATCA 414 611 846 Antisense
AAATGGAGCATCACCATCCGTGAGC 201 121 870 Antisense
TCCACGCAGAAACCCCGTTGTTTCA 194 589 978 Antisense
TTGGGGTCAGCTGAGCCGGCAAAAA 238 473 1042 Antisense
ATGATTCGTTTGATCCCAGAGCTGG 171 47 1088 Antisense
ATAATCCATTCGGTGCGGACTTCCT 173 25 1139 Antisense
GGACTTCCTCAGTGGCATTCAAAAT 415 523 1155 Antisense
GCTGAACTTCTCGCTTCTGAAGCAA 477 295 1207 Antisense
TCTGAAGCAATCGCTCGTCTTCCAA 509 607 1222 Antisense
TCCTCATCTGTACCACCCAAAAAGA 341 593 1255 Antisense
GGATCATTTGAGTTCGGGCAGCTTC 338 511 1342 Antisense
Sequence Source Affymetrix Proprietary Database