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[188051_at]

Description R13H4.5_rc /REP_DB=WormBase Gene ID /WP=CE12808 /TR=P90951 /GB=CAB04657.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_total > 34      4grp_total > 26      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 54.4
(-3)
M 		85.6
(-0.8)
A 		56.4
(-2.9)
A 		138.7
(3)
A 		84
B 48.4
(-3)
A 		89
(2)
A 		68.7
(-0.5)
A 		97
(3)
M 		49
C 63.9
(-1.5)
A 		92.7
(2.8)
A 		54
(-3)
A 		94
(3)
A 		40
avr 55.6
(-3) 		89.1
(0.7) 		59.7
(-2.5) 		109.9
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 89.9
(3)
A 		84
(2.3)
A 		56.9
(-1)
A 		39.9
(-3)
A 		65.9
(0.1)
A 		50.2
(-1.8)
A 		50
B 71
(0.5)
A 		68.2
(0.1)
P 		91.4
(3)
P 		59.7
(-0.9)
A 		42.8
(-3)
P 		57.1
(-1.2)
M 		49
C 53.4
(-0.4)
A 		69
(3)
P 		63.4
(1.8)
A 		42.4
(-2.8)
A 		41.4
(-3)
A 		53.1
(-0.5)
A 		28
avr 71.4
(2.5) 		73.7
(3) 		70.6
(2.3) 		47.3
(-3) 		50
(-2.4) 		53.5
(-1.6) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 19.8
(2.5)
M 		18.6
(1.1)
A 		14.8
(-3)
A 		20.3
(3)
A 		6
B 15.4
(-3)
A 		22
(3)
A 		15.9
(-2.5)
A 		20.7
(1.8)
M 		7
C 21.1
(-0.1)
A 		26.6
(3)
A 		18.8
(-1.3)
A 		15.8
(-3)
A 		11
avr 18.8
(-0.7) 		22.4
(3) 		16.5
(-3) 		18.9
(-0.6) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 16.6
(-1)
A 		29.9
(3)
A 		12.4
(-2.3)
A 		10.1
(-3)
A 		19.9
(-0)
A 		12.2
(-2.4)
A 		20
B 24.7
(3)
A 		22.7
(1.7)
P 		22.2
(1.3)
P 		15.8
(-3)
A 		17.4
(-1.9)
P 		21.3
(0.7)
M 		9
C 19.8
(2.4)
A 		21
(3)
P 		16.1
(0.6)
A 		8.5
(-3)
A 		13.4
(-0.6)
A 		17.8
(1.5)
A 		13
avr 20.4
(1.1) 		24.5
(3) 		16.9
(-0.5) 		11.5
(-3) 		16.9
(-0.5) 		17.1
(-0.4) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188051_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28153
Sequence Type Exemplar sequence
Representative Public ID R13H4.5 NCBI
Target Description R13H4.5_rc /REP_DB=WormBase Gene ID /WP=CE12808 /TR=P90951 /GB=CAB04657.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) R13H4.5
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
R13H4.5 R13H4.5_rc /REP_DB=WormBase Gene ID /WP=CE12808 /TR=P90951 /GB=CAB04657.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /REVCOMP None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_073585 11/11 Negative Strand Matching Probes A 
SNAP00000036684 11/11 Negative Strand Matching Probes None
GENEFINDER00000036693 11/11 Negative Strand Matching Probes None
R13H4.5.1 11/11 Negative Strand Matching Probes A 
R13H4.5.2 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11863271-11864658(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:188051_AT
tcatcagggacccatcttggagcctttgacgactgacatactggatcagaagttccactt
gctgattggaaagcaaaccagaatgcaatgtcatttgttgattgagcagctacacagagc
tcagcgagagaggcatcaagcgtaacagtgtgtgcattttctccataatatcgaattgca
gccatcattttgactgcgtcactgactgtccaatgagtatcaacaattattaggatacta
cgtgcttcctcgtgcacaacaattcttggagtttttggcatacggaaaaagtcaccgtct
ccattagtttccggcggaaggattgtgtcaacgtcagtacgtagaaaatctgcgtagagg
acacgttttcgacgtttatccactacgtttttgatcttgtgattgattcgacgcatttta
actcgctcgaatggagacaagttgtccagaatgttatcccatactgattctggcaaattt
ccgaattttggagagtttctcttttttccaaacttcagccttttgacaatactgttaccc
ccagcggcatcttttgccgacggcggatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATCAGGGACCCATCTTGGAGCCT 172 619 371 Antisense
GAGCCTTTGACGACTGACATACTGG 623 385 390 Antisense
GTAACAGTGTGTGCATTTTCTCCAT 564 461 512 Antisense
CAGCCATCATTTTGACTGCGTCACT 486 203 549 Antisense
CTGCGTCACTGACTGTCCAATGAGT 342 237 564 Antisense
TTAGGATACTACGTGCTTCCTCGTG 310 681 600 Antisense
CTTCCTCGTGCACAACAATTCTTGG 650 219 615 Antisense
GAAAAAGTCACCGTCTCCATTAGTT 212 355 655 Antisense
GATTCGACGCATTTTAACTCGCTCG 138 433 775 Antisense
GTTATCCCATACTGATTCTGGCAAA 528 445 823 Antisense
GGCATCTTTTGCCGACGGCGGATGA 72 537 916 Antisense
Sequence Source Affymetrix Proprietary Database