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[188050_at]

Description F47B8.11 /REP_DB=WormBase Gene ID /WP=CE10652 /GEN=sss-2 /TR=Q20524 /GB=CAB01199.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 34      6grp_cgc > 59      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 27.2
(-2)
A 		80.8
(3)
A 		17.1
(-3)
A 		34.4
(-1.4)
A 		64
B 8.5
(-3)
A 		63.2
(3)
A 		61.1
(2.8)
A 		25
(-1.2)
A 		55
C 34.3
(0.1)
A 		10.6
(-3)
A 		25.6
(-1)
A 		56.2
(3)
A 		46
avr 23.3
(-3) 		51.5
(3) 		34.6
(-0.6) 		38.5
(0.2) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 690
1 2 3 4 5 6 range
A 83.8
(-2.7)
A 		59.1
(-2.9)
A 		51.7
(-3)
A 		96.9
(-2.6)
P 		343.5
(-0.3)
P 		703.2
(3)
P 		652
B 13
(-3)
A 		24.7
(-2.9)
A 		33.3
(-2.8)
A 		61.6
(-2.5)
P 		325.9
(0.1)
P 		614.3
(3)
P 		601
C 47.7
(-2.9)
A 		65.6
(-2.7)
A 		34.4
(-3)
A 		51
(-2.8)
A 		324.3
(0.2)
P 		575.3
(3)
P 		541
avr 48.2
(-2.9) 		49.8
(-2.9) 		39.8
(-3) 		69.8
(-2.7) 		331.2
(-0) 		630.9
(3) 		591
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 9.9
(-0.5)
A 		17.5
(3)
A 		4.5
(-3)
A 		5
(-2.8)
A 		13
B 2.7
(-3)
A 		15.6
(3)
A 		14.2
(2.3)
A 		5.3
(-1.8)
A 		13
C 11.4
(3)
A 		3.1
(-3)
A 		8.9
(1.2)
A 		9.5
(1.6)
A 		8
avr 8
(-1.5) 		12.1
(3) 		9.2
(-0.2) 		6.6
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 225
1 2 3 4 5 6 range
A 15.4
(-2.8)
A 		21
(-2.6)
A 		11.3
(-3)
A 		24.6
(-2.5)
P 		103.7
(0.5)
P 		171.2
(3)
P 		160
B 4.5
(-3)
A 		8.2
(-2.9)
A 		8.1
(-2.9)
A 		16.3
(-2.7)
P 		132.4
(0.4)
P 		229.1
(3)
P 		225
C 17.7
(-2.7)
A 		20
(-2.6)
A 		8.7
(-3)
A 		10.3
(-2.9)
A 		104.9
(0.1)
P 		192.6
(3)
P 		184
avr 12.5
(-2.9) 		16.4
(-2.8) 		9.4
(-3) 		17.1
(-2.8) 		113.7
(0.3) 		197.6
(3) 		188
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188050_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14489
Sequence Type Exemplar sequence
Representative Public ID F47B8.11 NCBI
Target Description F47B8.11 /REP_DB=WormBase Gene ID /WP=CE10652 /GEN=sss-2 /TR=Q20524 /GB=CAB01199.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074156(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074156 NCBI Caenorhabditis elegans Sperm-Specific family, class S family member (sss-2) (sss-2) mRNA, complete cds. 11/11 None
SNAP00000011446 ENSEMBL cdna:SNAP chromosome:CEL140:V:14348560:14349555:1 11/11 None
GENEFINDER00000011456 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14345154:14349555:1 11/11 None
F47B8.11 ENSEMBL cdna:known chromosome:CEL140:V:14348614:14349555:1 gene:F47B8.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14348945-14349555(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sss-2
Ensembl F47B8.11
Entrez Gene 3565447 Entrez gene
SwissProt Q20524 EMBL-EBI
WormBase CE10652 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01198 Hypothetical protein F47B8.10 [Caenorhabditis elegans] ref|NP_506556.1| F47B8.10 [Caenorhabditis elegans] 0.0
blast CAE60917 Hypothetical protein CBG04634 [Caenorhabditis briggsae] 0.0
blast CAB01199 Hypothetical protein F47B8.11 [Caenorhabditis elegans] ref|NP_506557.1| Sperm-Specific family, class S family member (sss-2) [Caenorhabditis elegans] 2.0E-96
blast CAB01199 Hypothetical protein F47B8.11 [Caenorhabditis elegans] ref|NP_506557.1| Sperm-Specific family, class S family member (sss-2) [Caenorhabditis elegans] 4.0E-96
blast CAB01199 Hypothetical protein F47B8.11 [Caenorhabditis elegans] ref|NP_506557.1| Sperm-Specific family, class S family member (sss-2) [Caenorhabditis elegans] 2.0E-95
blast CAB03036 Hypothetical protein F32B6.5 [Caenorhabditis elegans] ref|NP_501780.1| Sperm-Specific family, class S family member (sss-1) [Caenorhabditis elegans] 5.0E-86
blast CAB03036 Hypothetical protein F32B6.5 [Caenorhabditis elegans] ref|NP_501780.1| Sperm-Specific family, class S family member (sss-1) [Caenorhabditis elegans] 3.0E-71
blast CAB03360 Hypothetical protein T13F2.9 [Caenorhabditis elegans] ref|NP_501741.1| T13F2.9 [Caenorhabditis elegans] 4.0E-60
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000011456 12 47-69,84-103,153-175,179-201,214-231,241-258,287-304,327-349,362-379,384-406,419-441,445-467
Sequence
Target Sequence 
>C. ELEGANS:188050_AT
ccccgattccaacaactgctgaaacgagaaagatcaatgaggctgccgaacttatggtca
acttctggatgagcttcgcctgcgttgaaaaagagaaggaacagatggcatcgatctttg
aaaagatgaatggactgtttgctgcaccatccacaacatctacggcatcactcttcggaa
agtacgaaggacttttcgagacaaccgaagttgccactgaagacttcaacactctttggt
ggaattatccagctcaaccgtcattcccacagcttccggtgttcgtcaggtctccaatcg
attcgattaaaatttatggagcaattcaacatgacttcggcatgtctgaagatgaatcag
tccaatatccttctccgatttctccatcctcggattcttcaagtgaaacaatcacccatg
tctcccctggatatctccttcaggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCCGATTCCAACAACTGCTGAAAC 132 261 17 Antisense
GAGGCTGCCGAACTTATGGTCAACT 709 405 55 Antisense
GATGAGCTTCGCCTGCGTTGAAAAA 217 411 84 Antisense
AATGGACTGTTTGCTGCACCATCCA 327 163 145 Antisense
GAAGACTTCAACACTCTTTGGTGGA 318 339 235 Antisense
GAATTATCCAGCTCAACCGTCATTC 423 325 258 Antisense
TGTTCGTCAGGTCTCCAATCGATTC 38 561 296 Antisense
GGAGCAATTCAACATGACTTCGGCA 88 521 334 Antisense
TGAATCAGTCCAATATCCTTCTCCG 457 575 369 Antisense
AGTGAAACAATCACCCATGTCTCCC 139 61 418 Antisense
CTCCCCTGGATATCTCCTTCAGGAA 280 233 438 Antisense
Sequence Source Affymetrix Proprietary Database