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[188049_at]

Description AH6.9 /REP_DB=WormBase Gene ID /WP=CE01463 /GEN=sra-5 /TR=SW:Q09207 /GB=CAA88080.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 10      6grp_cgc > 72      6grp_cgc_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 25
(-2)
A 		36
(-1.3)
A 		8.5
(-3)
A 		107.7
(3)
P 		99
B 11.9
(-2.4)
A 		48.8
(0.6)
P 		3.9
(-3)
A 		79.2
(3)
P 		75
C 2.3
(-3)
A 		8.4
(-2.8)
A 		22.2
(-2.3)
A 		174.9
(3)
P 		173
avr 13.1
(-2.9) 		31.1
(-1.9) 		11.5
(-3) 		120.6
(3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 9
(-2)
A 		2.7
(-2.9)
A 		43.9
(3)
A 		23.9
(0.1)
A 		1.8
(-3)
A 		20.3
(-0.4)
A 		42
B 28.4
(-0)
A 		26.5
(-0.6)
A 		18.9
(-3)
A 		38
(3)
A 		30.6
(0.7)
A 		25.5
(-0.9)
A 		19
C 18.9
(-1)
A 		50.4
(3)
P 		11.7
(-1.9)
A 		3.7
(-2.9)
A 		3.3
(-3)
A 		16.4
(-1.3)
A 		47
avr 18.8
(-0.2) 		26.5
(3) 		24.8
(2.3) 		21.9
(1.1) 		11.9
(-3) 		20.7
(0.6) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 9.1
(0)
A 		7.8
(-0.5)
A 		2.2
(-3)
A 		15.8
(3)
P 		14
B 3.8
(-1.9)
A 		12.1
(1.2)
P 		0.9
(-3)
A 		16.9
(3)
P 		16
C 0.8
(-3)
A 		2.4
(-2.7)
A 		7.7
(-1.6)
A 		29.5
(3)
P 		29
avr 4.6
(-2.6) 		7.4
(-1.7) 		3.6
(-3) 		20.7
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.7
(-2.2)
A 		1
(-2.7)
A 		9.6
(3)
A 		6.1
(0.7)
A 		0.5
(-3)
A 		4.9
(-0.1)
A 		9
B 9.9
(1.1)
A 		8.8
(0.2)
A 		4.6
(-3)
A 		10.1
(1.2)
A 		12.4
(3)
A 		9.5
(0.8)
A 		8
C 7
(-0.4)
A 		15.4
(3)
P 		3
(-2.1)
A 		0.7
(-3)
A 		1.1
(-2.8)
A 		5.5
(-1)
A 		15
avr 6.2
(-0.6) 		8.4
(3) 		5.7
(-1.4) 		5.6
(-1.5) 		4.7
(-3) 		6.6
(0.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188049_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3258
Sequence Type Exemplar sequence
Representative Public ID AH6.9 NCBI
Target Description AH6.9 /REP_DB=WormBase Gene ID /WP=CE01463 /GEN=sra-5 /TR=SW:Q09207 /GB=CAA88080.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000033437 ENSEMBL cdna:SNAP chromosome:CEL140:II:9546348:9547295:-1 9/11 None
AH6.9 ENSEMBL cdna:pseudogene chromosome:CEL140:II:9546348:9547557:-1 gene:AH6.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000033444 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9546344-9547292(-) 100.0 100.0
Public Domain and Genome References
Ensembl AH6.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast Q09207 Serpentine receptor class alpha 5 (Sra-5 protein) pir||T18616 hypothetical protein AH6.9 - Caenorhabditis elegans 1.0E-118
blast 2123261E chemosensory receptor 1.0E-118
blast 2123261J chemosensory receptor 1.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 1.4E-88
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 5.3E-24
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000033437 3 56-78,101-123,152-174
Sequence
Target Sequence 
>C. ELEGANS:188049_AT
gaacttgtgctacattcctgaacagttataaaaaaagaaaaagcaaaattatcggattct
caattgcacttgttgtattcatttgtagcgtatgtactggaacatttctaatgtggaacg
acccattggatggagcagttctcggatgttttatgttcccaaaacaaagtgctgctaact
ctgttgtctatttttccgtttgcacatttttgatacttttcaattttgcaatatcaattt
tattgaagatttataacaagaaatttgaattctcaacgcgatacgaaataactgctcgat
ttcgtaaacgagaagctattgattccactggaacagtgtgttttttagcattctccctat
ttgttctcatgctcatttattccattggggttagtgtcttgagacatttattgcacaccc
atgctcttgagtcgaaggatttttatttttatatagtttggatttatacagttccattta
ttgcaatgcttctcccactgcttctgatctaccgtatccgcgtggcacacgtgaatcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTTGTGCTACATTCCTGAACAG 354 351 131 Antisense
ATCGGATTCTCAATTGCACTTGTTG 48 35 181 Antisense
GCACTTGTTGTATTCATTTGTAGCG 234 317 196 Antisense
GGAGCAGTTCTCGGATGTTTTATGT 134 521 262 Antisense
AGTGCTGCTAACTCTGTTGTCTATT 617 59 298 Antisense
GTTGTCTATTTTTCCGTTTGCACAT 221 437 313 Antisense
CAGTGTGTTTTTTAGCATTCTCCCT 31 209 464 Antisense
CCCTATTTGTTCTCATGCTCATTTA 387 259 485 Antisense
GAGACATTTATTGCACACCCATGCT 201 393 531 Antisense
CACACCCATGCTCTTGAGTCGAAGG 216 187 544 Antisense
GTATCCGCGTGGCACACGTGAATCG 505 455 644 Antisense
Sequence Source Affymetrix Proprietary Database