[Home] | [Total List]

[188048_s_at]

Description W03G9.6 /REP_DB=WormBase Gene ID /WP=CE14564 /GEN=paf-1 /TR=O44753 /GB=AAB96738.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 28      6grp_cgc > 09      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 22.2
(-3)
A 		35.3
(1.2)
A 		24
(-2.4)
A 		40.8
(3)
A 		19
B 32
(3)
A 		26.7
(0.8)
A 		17.3
(-3)
A 		22.2
(-1)
A 		15
C 20.8
(-0.9)
A 		26.1
(-0.2)
A 		4.5
(-3)
A 		50.9
(3)
A 		46
avr 25
(-0.4) 		29.4
(0.7) 		15.3
(-3) 		38
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 38.5
(3)
A 		31.9
(1.5)
A 		12.1
(-3)
A 		20
(-1.2)
A 		17.7
(-1.7)
A 		23.1
(-0.5)
A 		26
B 23.4
(-1.8)
A 		17.1
(-3)
A 		22.9
(-1.9)
A 		48.4
(3)
A 		32.3
(-0.1)
A 		18.2
(-2.8)
A 		31
C 5.9
(-2.4)
A 		32.2
(3)
A 		3.1
(-3)
A 		9.3
(-1.7)
A 		27.9
(2.1)
A 		30.5
(2.6)
A 		29
avr 22.6
(1.1) 		27.1
(3) 		12.7
(-3) 		25.9
(2.5) 		26
(2.5) 		23.9
(1.7) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 8.1
(3)
A 		7.7
(1.9)
A 		6.3
(-2.1)
A 		6
(-3)
A 		2
B 10.2
(3)
A 		6.6
(-0.5)
A 		4
(-3)
A 		4.7
(-2.3)
A 		6
C 6.9
(1.5)
A 		7.5
(2.1)
A 		1.6
(-3)
A 		8.6
(3)
A 		7
avr 8.4
(3) 		7.3
(1.5) 		4
(-3) 		6.4
(0.3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 7.1
(0.1)
A 		11.4
(3)
A 		2.6
(-3)
A 		5.1
(-1.3)
A 		5.3
(-1.2)
A 		5.6
(-1)
A 		9
B 8.2
(-0.9)
A 		5.7
(-2.9)
A 		5.6
(-3)
A 		12.8
(2.8)
A 		13.1
(3)
A 		6.8
(-2)
A 		8
C 2.2
(-2.1)
A 		9.8
(2.7)
A 		0.8
(-3)
A 		1.9
(-2.3)
A 		9
(2.2)
A 		10.2
(3)
A 		9
avr 5.8
(-0.2) 		9
(2.9) 		3
(-3) 		6.6
(0.5) 		9.1
(3) 		7.5
(1.4) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188048_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2122
Sequence Type Exemplar sequence
Representative Public ID W03G9.6 NCBI
Target Description W03G9.6 /REP_DB=WormBase Gene ID /WP=CE14564 /GEN=paf-1 /TR=O44753 /GB=AAB96738.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059091(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059091 NCBI Caenorhabditis elegans PAF-acetylhydrolase family member (paf-1) (paf-1) mRNA, complete cds. 11/11 None
SNAP00000033396 ENSEMBL cdna:SNAP chromosome:CEL140:I:4984820:4986575:-1 11/11 None
GENEFINDER00000033404 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4984820:4986617:-1 11/11 None
W03G9.6 ENSEMBL cdna:known chromosome:CEL140:I:4984761:4986697:-1 gene:W03G9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4984819-4986617(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol paf-1
Ensembl W03G9.6
Entrez Gene 172120 Entrez gene
SwissProt O44753 EMBL-EBI
WormBase CE14564 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1583551_S_AT similar to platelet-activating factor acetylhydrolase 2 cfa
CANINE_2:CFA.18324.1.S1_S_AT similar to platelet-activating factor acetylhydrolase 2 cfa
CANINE_2:CFA.6217.1.A1_AT similar to platelet-activating factor acetylhydrolase 2 cfa
CANINE_2:CFAAFFX.19703.1.S1_AT similar to platelet-activating factor acetylhydrolase 2 cfa
HG-U133A:205233_S_AT platelet-activating factor acetylhydrolase 2, 40kDa hs
HG-U133_PLUS_2:205233_S_AT platelet-activating factor acetylhydrolase 2, 40kDa hs
HG-U133A_2:205233_S_AT platelet-activating factor acetylhydrolase 2, 40kDa hs
HG-U133_PLUS_2:205232_S_AT platelet-activating factor acetylhydrolase 2, 40kDa hs
HG-U133A:205232_S_AT platelet-activating factor acetylhydrolase 2, 40kDa hs
HG-FOCUS:205232_S_AT platelet-activating factor acetylhydrolase 2, 40kDa hs
HG-U133A_2:205232_S_AT platelet-activating factor acetylhydrolase 2, 40kDa hs
HU35KSUBA:D87845_AT platelet-activating factor acetylhydrolase 2, 40kDa hs
HUGENEFL:D87845_AT platelet-activating factor acetylhydrolase 2, 40kDa hs
U133_X3P:G4758877_3P_X_AT platelet-activating factor acetylhydrolase 2, 40kDa hs
U133_X3P:G2529432_3P_X_AT platelet-activating factor acetylhydrolase 2, 40kDa hs
U133_X3P:G2529432_3P_A_AT platelet-activating factor acetylhydrolase 2, 40kDa hs
U133_X3P:205233_3P_S_AT platelet-activating factor acetylhydrolase 2, 40kDa hs
U133_X3P:205232_3P_S_AT platelet-activating factor acetylhydrolase 2, 40kDa hs
HG-U95AV2:35874_AT platelet-activating factor acetylhydrolase 2, 40kDa hs
HU35KSUBB:RC_N38863_AT Platelet-activating factor acetylhydrolase 2, 40kDa hs
HG-U95C:60868_AT Platelet-activating factor acetylhydrolase 2, 40kDa hs
MG-U74AV2:104138_AT platelet-activating factor acetylhydrolase 2 mm
MG-U74BV2:107220_I_AT platelet-activating factor acetylhydrolase 2 mm
MOE430A:1448489_AT platelet-activating factor acetylhydrolase 2 mm
MOUSE430A_2:1448489_AT platelet-activating factor acetylhydrolase 2 mm
MOUSE430_2:1448489_AT platelet-activating factor acetylhydrolase 2 mm
MU11KSUBA:AA117911_AT Platelet-activating factor acetylhydrolase 2, mRNA (cDNA clone MGC:38105 IMAGE:5310200) mm
MU19KSUBA:TC18108_AT Platelet-activating factor acetylhydrolase 2, mRNA (cDNA clone MGC:38105 IMAGE:5310200) mm
MU19KSUBC:TC40818_AT Platelet-activating factor acetylhydrolase 2, mRNA (cDNA clone MGC:38105 IMAGE:5310200) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16042 lipid catabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
8247 2-acetyl-1-alkylglycerophosphocholine esterase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3847 1-alkyl-2-acetylglycerophosphocholine esterase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAL57289 PAF-1 [Caenorhabditis elegans] ref|NP_491492.1| PAF-acetylhydrolase family member (paf-1) [Caenorhabditis elegans] gb|AAB96738.1| Paf-acetylhydrolase protein 1 [Caenorhabditis elegans] 0.0
blast AAL57290 PAF-2 [Caenorhabditis elegans] ref|NP_741768.1| PAF-acetylhydrolase family member (paf-2) [Caenorhabditis elegans] gb|AAL65779.1| Paf-acetylhydrolase protein 2, isoform a [Caenorhabditis elegans] sp|Q22943|PAFA_CAEEL Platelet-activating factor acetylhydrolase homolog 1.0E-163
blast CAE68556 Hypothetical protein CBG14389 [Caenorhabditis briggsae] 1.0E-161
Protein Domains
Database ID Description E-Value
Pfam IPR005065 EMBL-EBI Platelet-activating factor acetylhydrolase, plasma/intracellular isoform II 1.0E-126
Pfam IPR005065 EMBL-EBI Platelet-activating factor acetylhydrolase, plasma/intracellular isoform II 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:188048_S_AT
aataagcttctcacgacgactgcgtcaattattggtcactcttttggaggtgcaactagc
attgcctcttcttcctcggatttccaaaaagcaattgtattggatggatggatgtatcca
ttggatcaaaatcaacaggagcaggcaaaacagccgataatgttcctaaatgttggagat
tggcagtggaatgagaatttggaagttatgaggaaaattcttccaaataacgaaggaaac
attctcttgactttaagtggagctgttcatcagagttttaccgatttcccatttgttttt
ccaaattggctcgccaagcagttcggagttcatggacctactgagccatatctctgtatg
caatctgcaattgaactcacattgtcatttttgaaagatgggaaagatggtgttcagaag
ttgaaagatgaaaagtacactacattcatcactaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATAAGCTTCTCACGACGACTGCGT 638 171 679 Antisense
GACTGCGTCAATTATTGGTCACTCT 287 375 696 Antisense
GAGGTGCAACTAGCATTGCCTCTTC 33 403 725 Antisense
TTCTTCCTCGGATTTCCAAAAAGCA 104 689 747 Antisense
CAGCCGATAATGTTCCTAAATGTTG 442 201 829 Antisense
GAAGGAAACATTCTCTTGACTTTAA 627 223 910 Antisense
GACTTTAAGTGGAGCTGTTCATCAG 70 373 927 Antisense
TCAGAGTTTTACCGATTTCCCATTT 583 621 948 Antisense
GTTTTTCCAAATTGGCTCGCCAAGC 104 449 973 Antisense
GACCTACTGAGCCATATCTCTGTAT 18 383 1013 Antisense
AAAGTACACTACATTCATCACTAAT 185 123 1110 Antisense
Sequence Source Affymetrix Proprietary Database