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[188043_at]

Description F44B9.1 /REP_DB=WormBase Gene ID /WP=CE00170 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=acylamino-acid-releasing enzyme
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 71      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 55      6grp_total > 71      4grp_total > 25      6grp_highest_sub > 04      6grp_cgc > 84      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6576
1 2 3 4 range
A 568.7
(-3)
P 		3186.4
(-0.6)
P 		2864.5
(-0.9)
P 		7144.3
(3)
P 		6576
B 689.8
(-3)
P 		2894.7
(-0.6)
P 		2780.7
(-0.7)
P 		6183.7
(3)
P 		5494
C 615
(-3)
P 		2767.5
(-0.2)
P 		2882.8
(-0.1)
P 		5286.3
(3)
P 		4671
avr 624.5
(-3) 		2949.5
(-0.5) 		2842.7
(-0.6) 		6204.8
(3) 		5580

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1241
1 2 3 4 5 6 range
A 1683.2
(2)
P 		1423.1
(0)
P 		1653
(1.8)
P 		1620.9
(1.5)
P 		1811
(3)
P 		1032.1
(-3)
P 		779
B 1126.6
(-3)
P 		1578.6
(0.1)
P 		1963.5
(2.6)
P 		2019.5
(3)
P 		1451.4
(-0.8)
P 		1121.3
(-3)
P 		898
C 828.6
(-3)
P 		1660.7
(1)
P 		1655.2
(1)
P 		2069.9
(3)
P 		1319.7
(-0.6)
P 		1291.6
(-0.8)
P 		1241
avr 1212.8
(-2.5) 		1554.1
(0.2) 		1757.2
(1.8) 		1903.4
(3) 		1527.4
(0) 		1148.3
(-3) 		755
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1114
1 2 3 4 range
A 207.1
(-3)
P 		691.7
(0.5)
P 		748.8
(0.9)
P 		1045.8
(3)
P 		839
B 220
(-3)
P 		714.9
(-0.3)
P 		644.4
(-0.7)
P 		1317.7
(3)
P 		1098
C 203.6
(-3)
P 		795.7
(1.4)
P 		1004.7
(3)
P 		891.4
(2.2)
P 		801
avr 210.2
(-3) 		734.1
(0.6) 		799.3
(1) 		1085
(3) 		875

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 338
1 2 3 4 5 6 range
A 310.3
(-1.8)
P 		506.1
(2.2)
P 		360
(-0.8)
P 		411.1
(0.2)
P 		546.5
(3)
P 		251.3
(-3)
P 		295
B 392
(-3)
P 		525.5
(1.1)
P 		476.8
(-0.4)
P 		534.9
(1.3)
P 		589.7
(3)
P 		418.1
(-2.2)
P 		198
C 307.1
(-3)
P 		506.7
(3)
P 		421.3
(0.4)
P 		416.3
(0.3)
P 		427
(0.6)
P 		432.4
(0.8)
P 		200
avr 336.5
(-3) 		512.8
(2.7) 		419.4
(-0.3) 		454.1
(0.8) 		521.1
(3) 		367.3
(-2) 		185
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188043_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7429
Sequence Type Exemplar sequence
Representative Public ID F44B9.1 NCBI
Target Description F44B9.1 /REP_DB=WormBase Gene ID /WP=CE00170 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=acylamino-acid-releasing enzyme
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171203(11), NM_171205(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171203 NCBI Caenorhabditis elegans Dipeptidyl Peptidase Four (IV) family member (dpf-6) (dpf-6) mRNA, complete cds. 11/11 None
NM_171205 NCBI Caenorhabditis elegans Dipeptidyl Peptidase Four (IV) family member (dpf-6) (dpf-6) mRNA, complete cds. 11/11 None
SNAP00000005272 ENSEMBL cdna:SNAP chromosome:CEL140:III:8038170:8041037:1 11/11 None
GENEFINDER00000005278 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8038170:8041037:1 11/11 None
F44B9.1a ENSEMBL cdna:known chromosome:CEL140:III:8038164:8041297:1 gene:F44B9.1 11/11 None
F44B9.1b ENSEMBL cdna:known chromosome:CEL140:III:8038779:8041037:1 gene:F44B9.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171204 1/11 Cross Hyb Matching Probes None
F44B9.1c 1/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176132 3 2 NM_171203 188043_at (11)
NM_171205 188043_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8037523-8041035(+) 100.0 100.0
Public Domain and Genome References
Ensembl F44B9.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM48525 Dipeptidyl peptidase four (iv) family protein 6, isoform a [Caenorhabditis elegans] ref|NP_741240.1| Dipeptidyl Peptidase Four (IV) family member (dpf-6) [Caenorhabditis elegans] sp|P34422|YL31_CAEEL Hypothetical protein F44B9.1 in chromosome III 0.0
blast CAE75053 Hypothetical protein CBG22967 [Caenorhabditis briggsae] 0.0
blast AAM48527 Dipeptidyl peptidase four (iv) family protein 6, isoform c [Caenorhabditis elegans] ref|NP_741241.1| Dipeptidyl Peptidase Four (IV) family member (dpf-6) [Caenorhabditis elegans] 0.0
blast AAM48526 Dipeptidyl peptidase four (iv) family protein 6, isoform b [Caenorhabditis elegans] ref|NP_741242.1| Dipeptidyl Peptidase Four (IV) family member (dpf-6) [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:188043_AT
aattcctccgtattggcttggattcagaaaggatttgatcaagatggttggagccgatat
ttctgatgaggaaggccgacaatcacttcaatctcgttctccattgttctttgctgaccg
cgtgaccaagccaattatgattatccaaggtgccaacgatccacgtgtcaagcaagcaga
atccgatcaatttgtagctgcattggaaaagaaacatattccagttacctatttattgta
tccagatgagggtcatggagtaagaaaaccacagaatagtatggaacaacacggacatat
tgaaacattccttcagcaatgtttgggtggagagacacaaccattccaacctggacaata
caattcttcagctattataaaaaaaatcggtatcgagggtgccgcaatcgctcgccaaaa
tctccaaattgctcaaaaccagtttgctcaacaattgccacgtggtccagtggctccatc
aattttctatagaccgcctgtccgtgctcaacgtgtcatgctagctcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCCTCCGTATTGGCTTGGATTC 55 179 1728 Antisense
AGGCCGACAATCACTTCAATCTCGT 495 53 1800 Antisense
ACCGCGTGACCAAGCCAATTATGAT 37 91 1844 Antisense
AACGATCCACGTGTCAAGCAAGCAG 67 145 1882 Antisense
GACACAACCATTCCAACCTGGACAA 135 367 2061 Antisense
TCGGTATCGAGGGTGCCGCAATCGC 612 605 2114 Antisense
TCGCTCGCCAAAATCTCCAAATTGC 598 599 2135 Antisense
GCTCAACAATTGCCACGTGGTCCAG 457 301 2173 Antisense
GTCCAGTGGCTCCATCAATTTTCTA 251 477 2192 Antisense
CAATTTTCTATAGACCGCCTGTCCG 642 179 2207 Antisense
TGCTCAACGTGTCATGCTAGCTCCA 619 579 2232 Antisense
Sequence Source Affymetrix Proprietary Database