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[188041_s_at]

Description C15H11.6 /REP_DB=WormBase Gene ID /WP=CE08183 /GEN=nxf-2 /TR=Q9XVS8 /GB=CAB02733.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 95      6grp_total > 85      4grp_total > 32      6grp_cgc > 67      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 50
(-3)
A 		104.9
(-0.2)
A 		166.3
(3)
A 		134.2
(1.3)
P 		116
B 52.8
(-3)
A 		108.1
(-0.2)
A 		100.8
(-0.5)
A 		170.3
(3)
P 		118
C 35.6
(-3)
A 		96.7
(0.8)
A 		133
(3)
A 		119.4
(2.2)
P 		97
avr 46.1
(-3) 		103.2
(0.6) 		133.4
(2.5) 		141.3
(3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 585
1 2 3 4 5 6 range
A 135
(-3)
M 		149.4
(-2.8)
P 		306.7
(-1.1)
P 		393.3
(-0.2)
P 		484.9
(0.8)
P 		681.8
(3)
P 		547
B 143.6
(-2.9)
P 		135.8
(-3)
P 		287.7
(-1.2)
P 		400.6
(0.1)
P 		543.3
(1.7)
P 		654.2
(3)
P 		518
C 96.9
(-3)
M 		192.6
(-2)
P 		264.3
(-1.2)
P 		486.9
(1.2)
P 		459.2
(0.9)
P 		653
(3)
P 		556
avr 125.2
(-3) 		159.3
(-2.6) 		286.2
(-1.2) 		426.9
(0.4) 		495.8
(1.1) 		663
(3) 		538
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 18.2
(-3)
A 		22.8
(-1.9)
A 		43.5
(3)
A 		19.7
(-2.6)
P 		25
B 16.8
(-3)
A 		26.7
(0)
A 		23.4
(-1)
A 		36.3
(3)
P 		20
C 11.8
(-3)
A 		27.8
(-0.2)
A 		46.4
(3)
A 		20.1
(-1.6)
P 		35
avr 15.6
(-3) 		25.8
(-0.2) 		37.8
(3) 		25.4
(-0.4) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 219
1 2 3 4 5 6 range
A 24.9
(-3)
M 		53.1
(-1.8)
P 		66.8
(-1.2)
P 		99.7
(0.2)
P 		146.3
(2.2)
P 		166
(3)
P 		141
B 50
(-2.9)
P 		45.2
(-3)
P 		69.9
(-2.3)
P 		106.1
(-1.2)
P 		220.7
(2.3)
P 		244
(3)
P 		199
C 35.9
(-3)
M 		58.8
(-2.2)
P 		67.3
(-2)
P 		97.9
(-1)
P 		148.6
(0.7)
P 		218.6
(3)
P 		183
avr 36.9
(-3) 		52.4
(-2.5) 		68
(-1.9) 		101.2
(-0.8) 		171.9
(1.7) 		209.5
(3) 		173
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188041_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13644
Sequence Type Exemplar sequence
Representative Public ID C15H11.6 NCBI
Target Description C15H11.6 /REP_DB=WormBase Gene ID /WP=CE08183 /GEN=nxf-2 /TR=Q9XVS8 /GB=CAB02733.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074167(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074167 NCBI Caenorhabditis elegans Nuclear eXport Factor family member (nxf-2) (nxf-2) mRNA, complete cds. 11/11 None
SNAP00000026577 ENSEMBL cdna:SNAP chromosome:CEL140:V:14418878:14421264:-1 11/11 None
GENEFINDER00000026584 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14418878:14420383:-1 11/11 None
C15H11.6 ENSEMBL cdna:known chromosome:CEL140:V:14418792:14420388:-1 gene:C15H11.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14418877-14420383(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol nxf-2
Ensembl C15H11.6
Entrez Gene 179938 Entrez gene
WormBase CE36102 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.27133.1.S1_AT similar to nuclear RNA export factor 2 cfa
CANINE_2:CFAAFFX.27133.1.S1_S_AT similar to nuclear RNA export factor 2 cfa
Protein Similarities
Method ID Description E-Value
blast CAB02733 Hypothetical protein C15H11.6 [Caenorhabditis elegans] ref|NP_506568.2| Nuclear eXport Factor family member (nxf-2) [Caenorhabditis elegans] 0.0
blast Q9XVS8 Nuclear RNA export factor 0.0
blast CAE60905 Hypothetical protein CBG04621 [Caenorhabditis briggsae] 1.0E-134
Sequence
Target Sequence 
>C. ELEGANS:188041_S_AT
tacagttgtctgcttgtgggacccaattaaatttgtcatgtatccggacagtgagagcta
tcgaatgtacctgagaacttcgcacaatgttctgaatcaggaatattttgccgcaaatcg
ggcctccagaatatcacacggtgcaatggatatcgtagttgcactttcgagacttcctgc
cacaattcatctgatggatacattcgtagttgacgtgttccttgtttcggcaacacttct
cggattcacattacatggaacatttcgtgacggaccatctgcgataaagcccgagaacac
tgaggaacatgataattattttacgagaacattcatggttgctccaagaggcgaaggaaa
agtcgccattgtttccgatcagctgttcattagctcgatgtcaaaaagacgcggcgatca
gtaccgcatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAGTTGTCTGCTTGTGGGACCCA 523 641 816 Antisense
GAATGTACCTGAGAACTTCGCACAA 666 329 878 Antisense
GCAAATCGGGCCTCCAGAATATCAC 574 317 928 Antisense
CGTAGTTGCACTTTCGAGACTTCCT 321 245 969 Antisense
CTTCCTGCCACAATTCATCTGATGG 42 219 988 Antisense
TAGTTGACGTGTTCCTTGTTTCGGC 189 653 1022 Antisense
GCAACACTTCTCGGATTCACATTAC 567 319 1045 Antisense
GAACATTTCGTGACGGACCATCTGC 220 351 1073 Antisense
GACCATCTGCGATAAAGCCCGAGAA 611 383 1088 Antisense
AAAAGTCGCCATTGTTTCCGATCAG 370 133 1173 Antisense
AGACGCGGCGATCAGTACCGCATGC 475 71 1222 Antisense
Sequence Source Affymetrix Proprietary Database