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[188036_at]

Description F16H6.3_rc /REP_DB=WormBase Gene ID /WP=CE18599 /TR=Q9XV90 /GB=CAB04129.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_total > 33      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3.1
(-3)
A 		6.4
(-0.5)
A 		3.9
(-2.4)
A 		10.9
(3)
A 		8
B 3.4
(-3)
A 		7
(3)
A 		5.1
(-0.2)
A 		4.5
(-1.2)
A 		4
C 3.6
(-3)
A 		6.6
(-1.5)
A 		3.8
(-2.9)
A 		15.5
(3)
A 		12
avr 3.4
(-3) 		6.7
(-0.1) 		4.3
(-2.2) 		10.3
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 9.6
(3)
A 		2.3
(-2.8)
A 		7.2
(1.1)
A 		2.2
(-2.8)
A 		5.7
(-0.1)
A 		2
(-3)
A 		8
B 4.2
(3)
A 		3.7
(1)
A 		3.1
(-1.4)
A 		2.7
(-3)
A 		2.9
(-2.2)
A 		2.9
(-2.2)
A 		2
C 2.4
(-2.8)
A 		5.4
(3)
A 		3.1
(-1.5)
A 		3.6
(-0.5)
A 		2.3
(-3)
A 		2.5
(-2.6)
A 		3
avr 5.4
(3) 		3.8
(-0.3) 		4.5
(1.1) 		2.8
(-2.4) 		3.6
(-0.7) 		2.5
(-3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.1
(-2)
A 		1.4
(1)
A 		1
(-3)
A 		1.6
(3)
A 		1
B 1.1
(-2.1)
A 		1.7
(3)
A 		1.2
(-1.3)
A 		1
(-3)
A 		1
C 1.2
(-3)
A 		1.9
(-0)
A 		1.3
(-2.6)
A 		2.6
(3)
A 		1
avr 1.1
(-3) 		1.7
(3) 		1.2
(-2) 		1.7
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 1.8
(3)
A 		0.8
(-1.6)
A 		1.6
(2.1)
A 		0.6
(-2.5)
A 		1.7
(2.5)
A 		0.5
(-3)
A 		1
B 1.5
(3)
A 		1.2
(0.8)
A 		0.7
(-3)
A 		0.7
(-3)
A 		1.2
(0.8)
A 		1.1
(0)
A 		1
C 0.9
(-1.8)
A 		1.7
(3)
A 		0.8
(-2.4)
A 		0.7
(-3)
A 		0.7
(-3)
A 		0.8
(-2.4)
A 		1
avr 1.4
(3) 		1.2
(1.3) 		1
(-0.4) 		0.7
(-3) 		1.2
(1.3) 		0.8
(-2.1) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188036_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28155
Sequence Type Exemplar sequence
Representative Public ID F16H6.3 NCBI
Target Description F16H6.3_rc /REP_DB=WormBase Gene ID /WP=CE18599 /TR=Q9XV90 /GB=CAB04129.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) F16H6.3
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F16H6.3 F16H6.3_rc /REP_DB=WormBase Gene ID /WP=CE18599 /TR=Q9XV90 /GB=CAB04129.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /REVCOMP A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075157 11/11 Negative Strand Matching Probes A 
GENEFINDER00000001306 10/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18197879-18200437(-) 100.0 100.0
Public Domain and Genome References
Ensembl F16H6.3
Sequence
Target Sequence 
>C. ELEGANS:188036_AT
gtgcatctggagcatgtccgttggcagtttttattcacaaaatcttgcattccaacagcg
ttacagatggatatgtcgacgggacagtcggcaattgcgtccacacaacctccgagatta
cagaacccgcaagccgacgggcagtcctctgcgatgatcgttcgccagcgttgatctctg
cactgagcaggtaggattgtggcgcagttgagacgggggaaatcagcattcctacagtta
tacgcactggtcttgcaacagaatccgcaagtttttgggcacgtcgccatgccatccaca
accagatccggattaattggctcagtaagatacggcgctggacccctggtccagcacctg
accggacggagcccgttgcctccggcggtaggtacaacacctaacagaacacggcagaag
gtctccgtgcggacattgtcgcaggcaactgcttgtggcgtgtagacgtaatctccaaga
acagagtcgtatcttgtgcagttgagctcaccgccgattgcaggttggcattcgacgacg
ttccacaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCATCTGGAGCATGTCCGTTGGC 227 479 200 Antisense
GGGACAGTCGGCAATTGCGTCCACA 181 495 280 Antisense
AACCTCCGAGATTACAGAACCCGCA 491 147 306 Antisense
GCAGTCCTCTGCGATGATCGTTCGC 592 311 340 Antisense
GAATCCGCAAGTTTTTGGGCACGTC 674 327 460 Antisense
GTTGCCTCCGGCGGTAGGTACAACA 679 437 574 Antisense
GTCTCCGTGCGGACATTGTCGCAGG 72 471 620 Antisense
GCAACTGCTTGTGGCGTGTAGACGT 67 321 644 Antisense
GAGTCGTATCTTGTGCAGTTGAGCT 676 399 683 Antisense
CTCACCGCCGATTGCAGGTTGGCAT 573 227 706 Antisense
TTGGCATTCGACGACGTTCCACAAA 73 709 724 Antisense
Sequence Source Affymetrix Proprietary Database