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[188032_at]

Description R07A4.2 /REP_DB=WormBase Gene ID /WP=CE03531 /GEN=egl-36 /TR=Q21780 /GB=CAA91762.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 22      4grp_highest_8_8 > 49      4grp_high_8_8 > 42      6grp_highest_nonorm > 80      6grp_total > 13      4grp_total > 45      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 306.3
(3)
P 		146.7
(-3)
P 		174.7
(-1.9)
P 		174.6
(-2)
P 		160
B 221
(1.6)
P 		254.2
(3)
P 		140.1
(-1.8)
P 		110.8
(-3)
P 		143
C 267.5
(3)
P 		216.3
(0.5)
P 		204.7
(-0.1)
P 		146.2
(-3)
P 		121
avr 264.9
(3) 		205.7
(0.1) 		173.2
(-1.5) 		143.9
(-3) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 243
1 2 3 4 5 6 range
A 210
(-0.4)
P 		240
(0.6)
P 		309
(3)
P 		202.6
(-0.7)
P 		228.6
(0.2)
P 		135.7
(-3)
P 		173
B 377
(3)
P 		240.1
(-0.8)
P 		232.5
(-1)
P 		305.3
(1)
P 		248.1
(-0.6)
P 		160
(-3)
P 		217
C 284.3
(0.2)
P 		378.8
(3)
P 		239.9
(-1.1)
P 		253.4
(-0.7)
P 		208.3
(-2)
P 		176
(-3)
P 		203
avr 290.4
(3) 		286.3
(2.8) 		260.5
(1.7) 		253.8
(1.4) 		228.3
(0.2) 		157.2
(-3) 		133
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 111.5
(3)
P 		31.8
(-2.6)
P 		45.7
(-1.6)
P 		25.6
(-3)
P 		86
B 70.5
(3)
P 		62.8
(2)
P 		32.5
(-1.9)
P 		23.6
(-3)
P 		47
C 88.6
(3)
P 		62.2
(0.5)
P 		71.4
(1.4)
P 		24.7
(-3)
P 		64
avr 90.2
(3) 		52.3
(-0.5) 		49.9
(-0.7) 		24.6
(-3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 38.7
(-2.3)
P 		85.4
(3)
P 		67.3
(0.9)
P 		51.4
(-0.9)
P 		69
(1.1)
P 		33
(-3)
P 		52
B 131.2
(3)
P 		79.9
(-1.1)
P 		56.5
(-3)
P 		80.9
(-1)
P 		100.8
(0.6)
P 		59.7
(-2.7)
P 		75
C 105.4
(2.1)
P 		115.6
(3)
P 		61.1
(-2.1)
P 		51
(-3)
P 		67.4
(-1.5)
P 		58.9
(-2.3)
P 		65
avr 91.8
(2.7) 		93.6
(3) 		61.6
(-1.5) 		61.1
(-1.5) 		79.1
(1) 		50.5
(-3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188032_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16925
Sequence Type Exemplar sequence
Representative Public ID R07A4.2 NCBI
Target Description R07A4.2 /REP_DB=WormBase Gene ID /WP=CE03531 /GEN=egl-36 /TR=Q21780 /GB=CAA91762.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077395(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077395 NCBI Caenorhabditis elegans R07A4.2 (R07A4.2) mRNA, complete cds. 11/11 None
SNAP00000024557 ENSEMBL cdna:SNAP chromosome:CEL140:X:10744486:10746338:-1 11/11 None
GENEFINDER00000024561 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10744486:10746338:-1 11/11 None
R07A4.2 ENSEMBL cdna:known chromosome:CEL140:X:10744272:10746338:-1 gene:R07A4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10744485-10746338(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R07A4.2
Entrez Gene 259723 Entrez gene
SwissProt Q21780 EMBL-EBI
WormBase CE03531 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91762 Hypothetical protein R07A4.2 [Caenorhabditis elegans] ref|NP_509796.1| R07A4.2 [Caenorhabditis elegans] 5.0E-87
blast CAE70827 Hypothetical protein CBG17604 [Caenorhabditis briggsae] 4.0E-74
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509796.1 4 20-39,59-81,94-116,126-143
R07A4.2 4 20-39,59-81,94-116,126-143
SNAP00000024557 4 20-39,59-81,94-116,126-143
GENEFINDER00000024561 4 20-39,59-81,94-116,126-143
Sequence
Target Sequence 
>C. ELEGANS:188032_AT
gatggacctccattgatgcttaatcgagcgttcttcgaaaggaaagaaaattttctgaag
attctccaattgatttttggtttcatcaacctctccgccaactattggtgctacccaaac
caacacttcctttattgcggcgaaaggtacttcacctcctctcaagtgtttcaactgatc
gttttcaatgggttctgcctttttcttacattgtctttagttgtggcaaatgtgactggt
gcttatgacgcattttacaagacaaacccatatgtattagagcgatatttggtgttcctt
cagacgtttctatacacggttgcttatgttacactgatagtggactacgaaaataatcca
tatgcaaaagcatttgcaattccgctgatctctacaacgtttactttgcttgcttacatc
atcgact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGACCTCCATTGATGCTTAATC 465 407 19 Antisense
ATTTTTGGTTTCATCAACCTCTCCG 129 13 91 Antisense
CAAACCAACACTTCCTTTATTGCGG 709 191 134 Antisense
TTGCGGCGAAAGGTACTTCACCTCC 59 695 153 Antisense
TTCACCTCCTCTCAAGTGTTTCAAC 521 687 169 Antisense
GATCGTTTTCAATGGGTTCTGCCTT 689 411 195 Antisense
CTGCCTTTTTCTTACATTGTCTTTA 568 235 213 Antisense
TATTTGGTGTTCCTTCAGACGTTTC 362 661 304 Antisense
CAGACGTTTCTATACACGGTTGCTT 667 205 319 Antisense
TTTGCAATTCCGCTGATCTCTACAA 161 669 391 Antisense
ACTTTGCTTGCTTACATCATCGACT 64 103 421 Antisense
Sequence Source Affymetrix Proprietary Database